UFO11045.5prime Sequence
1115 bp (1010 high quality bases) assembled on 2012-02-08
> UFO11045.5prime
CAGTCGACATGAGCCCCAAGCTGCATGAGTTTGCGGTGGTGCTACTGCGC
GATGGTCAGGCCACGCCCTGGGGCATTCGTTTGGTGGGCGGCAACGATCT
GGACACGCCGCTAATTATCACCAGGGTGCAAGTGGGCAGCCCAGCGCATG
GCGAACTTCTAAGAGGCGACATCATCTCGAAGATCGGCGAGTACGACGCA
CGCGACCTGAGTCATGCGGATGCACAGCAGCTGTTCCGCGGCGCTGGCAA
CGAGATCCGCCTGGTGGTGCACAGGGACAACAAAATCGCCTACACGCAGG
GTGCAACTCAGGAGGCAGGTCCTGGATCTCGGAGCAACTCCACTTTGCCG
CCGGTCACTCCGGATCTGATGCCCCACCGCGGTCCGTCGCCCTTTTTGCC
CGGACCCAGCCACTTTGAGAGGGCCCTCCAGTTGCCGGTGGACACGTTGC
CGCAGACCGTGTTTCCCCAGCTGAACTCATCCGGTGGCTATGAGGTGCCA
TCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAAGACGTCGA
TGAGGAGCAGGCGGCCATTGTGAATCAGCCCTACCGTACAACTCCGCTGG
TCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAGAGTCCTAC
TTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGACACGACTA
CCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCTGCACAAGG
TGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACAAGCAATTCAAC
TCGCCCATTGGCCCTGTACTCCAACAACAACATCGAGGACACCATCAGAT
CCACAGTTCCCTATAAGAAAACTGTCCAGTACGATCCCAGGAACAGCGAA
ACCTACAGAGCCATTCAAGAGAGGGCGCTACAGCAACTATGGCCATCCTC
GCCACAGAGTGACCATCCTGTGCAGACTACGTCTATCAGCCCAATAGATG
TTCAGAAAGAACCAGTATCAGCGCAGTATCCCGCCGCGTACATGTGTTAA
CACCCACGAATGAAACATACGCCCAGGACCGATCTCATCGTCTCAATGTT
ACAAGGGTAAATGGT
UFO11045.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp66-RK | 1642 | CG6416-RK | 186..1266 | 9..1073 | 4905 | 98 | Plus |
| Zasp66-RN | 1793 | CG6416-RN | 312..1277 | 124..1073 | 4330 | 97.7 | Plus |
| Zasp66-RM | 1554 | CG6416-RM | 186..1038 | 9..862 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8627424..8627730 | 272..578 | 1535 | 100 | Plus |
| 3L | 28110227 | 3L | 8634580..8634785 | 576..781 | 1030 | 100 | Plus |
| 3L | 28110227 | 3L | 8626960..8627110 | 125..275 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 8626394..8626512 | 9..127 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 8637439..8637584 | 861..999 | 400 | 94.5 | Plus |
| 3L | 28110227 | 3L | 8635002..8635081 | 780..860 | 355 | 98.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:06:56 has no hits.
UFO11045.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:59 Download gff for
UFO11045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RK | 179..1242 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:16 Download gff for
UFO11045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RK | 179..1242 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:11 Download gff for
UFO11045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RK | 179..1242 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:11 Download gff for
UFO11045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8626961..8627109 | 126..274 | 100 | -> | Plus |
| 3L | 8627427..8627730 | 275..578 | 100 | -> | Plus |
| 3L | 8634583..8634783 | 579..779 | 100 | -> | Plus |
| 3L | 8635002..8635081 | 780..860 | 98 | -> | Plus |
| 3L | 8637439..8637598 | 861..1009 | 92 | -> | Plus |
| 3L | 8626387..8626510 | 1..125 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:16 Download gff for
UFO11045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8619487..8619610 | 1..125 | 96 | -> | Plus |
| arm_3L | 8620061..8620209 | 126..274 | 100 | -> | Plus |
| arm_3L | 8620527..8620830 | 275..578 | 100 | -> | Plus |
| arm_3L | 8627683..8627883 | 579..779 | 100 | -> | Plus |
| arm_3L | 8628102..8628181 | 780..860 | 98 | -> | Plus |
| arm_3L | 8630539..8630698 | 861..1009 | 92 | -> | Plus |
