UFO11046.5prime Sequence
1058 bp (1002 high quality bases) assembled on 2012-02-08
> UFO11046.5prime
CAGTCGACATGGCACAGGAGTACAGTGTGCAGTTAACCTTCCGTGAACAG
TGGACGGATGAACGCCTCAAGTTCGACGATATCCAGGGTCGCCTAAAGTA
TCTGACCCTGACGGAGGCGAACCGCGTGTGGATGCCCGATCTTTTCTTCT
CGAACGAGAAGGAGGGACACTTCCACAACATCATCATGCCCAATGTGTAT
ATTCGCATCTTCCCCAACGGATCTGTGCTATATAGTATACGTATCTCGCT
GACATTGGCCTGCCCAATGAACCTAAAGCTGTATCCGCTGGATAGACAGA
TCTGCTCACTACGGATGGCCAGCTATGGCTGGACCACCAACGACTTGGTC
TTCCTGTGGAAGGAGGGCGATCCCGTACAGGTGGTAAAGAACTTACACCT
ACCTCGCTTCACACTGGAGAAGTTTCTGACTGATTACTGTAACAGTAAAA
CCAACACCGGTGAATACAGTTGCCTCAAAGTCGATCTACTATTCAAGCGA
GAATTCTCATATTACTTAATACAAATTTATATACCATGCTGTATGTTGGT
CATTGTATCATGGGTATCATTCTGGCTGGATCAAGGAGCAGTACCGGCGC
GAGTGTCACTGGGTGTCACCACCCTGCTGACCATGGCCACCCAGACGTCG
GGCATAAACGCCTCCCTGCCGCCCGTTTCCTATACGAAGGCCATCGATGT
GTGGACAGGCGTGTGTCTGACGTTCGTGTTCGGGGCCCTGCTCGAGTTCG
CCCTGGTGAACTATGCATCCCGATCAGGTTCGAATAAAGCTAGTATGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAAT
CATAATCATAAATCATATTCATAATCACAACTAGCCTGGAGATCCTGGTC
ATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGA
GCGTTCTGAACAAATCCAGATGGAAGTTCTGAGGTCATTACTGTAATCCT
ATTCAACAGGGATTCAAAGCGAGCCCGATATCAATTACCGCCCCCGGCCC
TGGCATCT
UFO11046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GluClalpha-RE | 1650 | CG7535-RE | 821..1607 | 9..795 | 3935 | 100 | Plus |
| GluClalpha-RN | 2569 | CG7535-RN | 897..1679 | 17..799 | 3885 | 99.7 | Plus |
| GluClalpha-RM | 5658 | CG7535-RM | 897..1679 | 17..799 | 3885 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19760394..19760631 | 87..324 | 1190 | 100 | Plus |
| 3R | 32079331 | 3R | 19764248..19764431 | 612..795 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 19763597..19763752 | 459..614 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 19760900..19761036 | 325..461 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 19760260..19760336 | 13..89 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7002..7043 | 153..194 | 111 | 73.8 | Plus |
UFO11046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:10:52 Download gff for
UFO11046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluClalpha-RE | 577..1373 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:11:56 Download gff for
UFO11046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluClalpha-RE | 577..1373 | 9..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:38:55 Download gff for
UFO11046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GluClalpha-RE | 821..1617 | 9..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:38:55 Download gff for
UFO11046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19760395..19760631 | 88..324 | 100 | -> | Plus |
| 3R | 19760900..19761034 | 325..459 | 100 | -> | Plus |
| 3R | 19763598..19763750 | 460..612 | 100 | -> | Plus |
| 3R | 19764249..19764441 | 613..805 | 97 | == | Plus |
| 3R | 19760253..19760334 | 5..87 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:11:56 Download gff for
UFO11046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15585975..15586056 | 5..87 | 96 | -> | Plus |
| arm_3R | 15586117..15586353 | 88..324 | 100 | -> | Plus |
| arm_3R | 15586622..15586756 | 325..459 | 100 | -> | Plus |
| arm_3R | 15589320..15589472 | 460..612 | 100 | -> | Plus |
| arm_3R | 15589971..15590163 | 613..805 | 97 | == | Plus |
