UFO11049.5prime Sequence
1110 bp (1004 high quality bases) assembled on 2012-02-08
> UFO11049.5prime
CAGTCGACATGGGTTGTTGTTTTGGCAAAAGTAAATCAGTCGATTTGCCC
GCGGTTCCGCCGGCTCCAGCCAAACAACGCTCCACTCTGCCAGAATTCCC
GATTTCTGGATCGGTGACTAGCACGGCTCCTGCAGGATCTGGATATGGAT
CTGGAGGAGCCACCAATGCGGCCCTCGAGGATGACGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAA
AAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGT
AACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCG
TGATATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAAC
GGTGTAACAAGGGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCA
TTGCCATACGAAATTCCCGGATGAGCATTCATCAGGCGGGCAAGAATGTG
AATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGTCTTTAAAAG
CCGTAATATCCAGCTGAACGGTCTGATAATAGGTAACATTGAGCAACTGA
CTGAAAAAGCCTCAAAATGTTCTTTACGATGCCATTGGGATATATCACGG
TGTATATCCAGTGATTTTTTTCTCATTTAGCGTCTTAGCTTCTGAAAGAT
TCATACCTTC
UFO11049.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34288-RB | 436 | CG34288-RB | 48..224 | 9..185 | 885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22446975..22447136 | 185..24 | 810 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 229..299 | 751..821 | 129 | 68.1 | Plus |
UFO11049.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:01 Download gff for
UFO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34288-RB | 44..224 | 1..185 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:21 Download gff for
UFO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34288-RB | 44..224 | 1..185 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:15 Download gff for
UFO11049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34288-RB | 44..224 | 1..185 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:39:15 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 18:12:21 has no hits.
