UFO11051.5prime Sequence
1132 bp (1007 high quality bases) assembled on 2012-02-08
> UFO11051.5prime
CAGTCGACATGGCTCTTCGATTCACACTCACTCTGCTCCTGGTCACGATC
CTGGTCGCAGCCATACTTTTGGGCTCCAGTGAGGCAGCCTACAGGAAGCC
TCCGTTCAACGGCAGCATCTTCGGCAAACGCAACAGCCTAGACTACGACA
GCGCCAAAATGAGCGCCGTTTGCGAGGTGGCCATGGAGGCGTGTCCCATG
TGGTTTCCCCAGAACGACAGCAAAGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACA
TCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGGTATTCACTC
CAGAGCGATGAAACGTTTCAGTTGCTCATGGAAAACGGTGTAACAAGGGT
GAACACTATCCCATATCACAGCTCACCCGTCTTTCATTGCCATACGAAAT
CCGGATGAGCATTCATCAGCGGGCAAGAATTGTTGAATAAAGGCCGAATA
AACCTGTTCTTATTTTCTTTACGGTCTTAAAGCCGTATATCCAGCTGACG
GTCTGGTTATAGTACATTGAAGCACTGACTGAAATGCCTCCAAATGTTCC
TTACGATGTGCATGGATATATCACCGGGTGGATAACCAGATGATTTTTTT
CCTCATTTGACTTCTGAGCTCTGAAGATTCAT
UFO11051.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SIFa-RB | 526 | CG33527-RB | 78..293 | 9..224 | 1080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24577934..24578066 | 141..9 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 24577799..24577883 | 224..140 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:07:12 has no hits.
UFO11051.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:03 Download gff for
UFO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IFa-RB | 62..284 | 1..224 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:26 Download gff for
UFO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IFa-RB | 71..293 | 1..224 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:19 Download gff for
UFO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SIFa-RB | 71..293 | 1..224 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:19 Download gff for
UFO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24577799..24577881 | 142..224 | 100 | <- | Minus |
| 2R | 24577934..24578073 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:26 Download gff for
UFO11051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20465322..20465404 | 142..224 | 100 | <- | Minus |
| arm_2R | 20465457..20465596 | 1..141 | 97 | | Minus |
