UFO11052.5prime Sequence
1159 bp (971 high quality bases) assembled on 2012-02-08
> UFO11052.5prime
CAGTCGACATGTTCCTACAATGTCCTTCGGTGATGCGAGGTTCTAAACAC
TTTTCTCAGCACATGAGCGATTTCAGTTCTGGAAGCCATCAGAACACGGA
CAATTTCAGCGATTGTTGGTTGGAATCCAATAGTAGTCAGGATTCGTATT
TCGGTCAATCTAGTCGACTGAAACTTGCCCTCCTGGATTACAAACAGTTC
AACGCTGCAAGGACTATTCAGTGTCATGTGAGGGGATTTTTGGCCAGAAG
TACTCTTAAAAGGCAGATCGATGCTGCCACCATCATTAGCAAGTGGTGGC
GTGGTTTCTGGGTGCGACACTCAAAGTTCTCCTTTATGCAACAGCTGTTA
CAGCAGAGGATCATCCAGTATCACCACGATATGGCCACTAAGATTCAGGC
GCTGTTCCGCGGATGGATGACTCGCCAGTACTTCCAGGACTTCCAGGGCA
TGAAGTCGCTCCGAATACAGTATGTGGAAGATATGCTCAGTTCGCTTTAC
AGAAAGGTCCACAGAATGCGAAAGGAACATATGCTACCAGGAATTTATGC
ATTAAGGGAATCTGATCTGCTAAGTAAGATCGAGGACCTTTCTAGTACCT
TTGGCTACCGCTTTCATAACGGCCGTGTGCGGGCAGCCATTGCAATGAAG
CGATCCTTCATAAACGACCGGCGACATGAGTTCCGAAAGGGAAATACTTA
TTCCAAAGTGCCTTATCCGGGACCCTATATAGAAAACATTAACGACTTAG
AATTTACCTTGCCAAAGCGAATGACACCACGTTTGCAGCGTACGATTCTG
GGTATATGACAAGGCAATGAGAGATAAGAATGTGGAGAAGGTGTACATGA
ACTATTCAACCAACGTCTTATGAGCATGCATGTCATGCGAGAGATAATGC
GAAATCGTTTTTGCAAGATTTTGTAAAGGCGTTTGGCAAAAAGAACAAGA
CACGAAACGCACAGGATCGTAACCATTAAATTCTATCTGATGAATCTTCC
TAACGACCGGCTGATTGATATAAATTGTTTTTGCAAGGCCCAAGTAAAAG
ACGATAGCTTGTGGCCAAGCAGGCTTTTCTAGAACATTTCGTTGGCCGCG
GGGCCCAGGGTTAGGTGGCCATAATCCATAATTCTTATCAAAATCTTAAA
TCCCACAAC
UFO11052.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12448-RC | 1293 | CG12448-RC | 65..1117 | 8..1063 | 4920 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15941505..15942062 | 8..565 | 2790 | 100 | Plus |
| 2L | 23513712 | 2L | 15942125..15942420 | 566..862 | 1435 | 99.7 | Plus |
| 2L | 23513712 | 2L | 15942480..15942678 | 862..1063 | 490 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:07:15 has no hits.
UFO11052.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:03 Download gff for
UFO11052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 56..1131 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:27 Download gff for
UFO11052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 56..1131 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:21 Download gff for
UFO11052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12448-RC | 56..1131 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:21 Download gff for
UFO11052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15942125..15942420 | 566..861 | 99 | -> | Plus |
| 2L | 15941496..15942062 | 1..565 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:27 Download gff for
UFO11052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15941496..15942062 | 1..565 | 99 | -> | Plus |
| arm_2L | 15942125..15942420 | 566..861 | 99 | -> | Plus |
