UFO11053.5prime Sequence
1139 bp (1054 high quality bases) assembled on 2012-02-08
> UFO11053.5prime
CAGTCGACATGTGGCGCCATCGCCACCTGGCCACTATCCTCCTGCTGGCG
GTGTGCGTTTCCCAAGGATCTGGATTAGCCTTGGACCAACCCGAAGGACG
CGTTGTGGGTGGAAAAGCGGCGGCGGCCAATAGTGCTCCGTATATAGTGT
CCATGCAGTACGGAGGAACTCACTATTGCGCCGCTAACATCATTAATTCC
AACTGGCTGGTAACGGCTGCTCACTGCCTGGCCAATAGGAATCAAGTACT
TGGAAGCACCCTGGTGGCTGGAAGCATTGCGGTGGCCGGAACAGCGAGCA
CAACACAGAAGAGGCAAATCACCCACTATGTGATCAATGATCTTTATACC
GGCGGAACTGTGCCCTATGACATCGGATTGATTTACACGCCCACCGCCTT
CACTTGGACCGCTGCAGTGGCTCCGGTGAAGCTGCCATCGTCCGGCGTGA
GGCCAACTGGAAAGGCTGACCTCTTTGGCTGGGGCAGTACTAGCAAAACG
AATAGCCCCTCATATCCGAAAACCCTCCAGGAGGCGAAGAACATACCCAT
CATAAGCCTCGACTCCTGCGCTGCGGCACTTGGCTCTAAGGGTCAGGATG
TGCACACCACGAACCTGTGCACAGGTCCTCTCACCGGCGGCACCAGCTTT
TGCACCTCGGACTCCGGTGGTCCGCTGGTCCAGGGAAACGTTCTAATCGG
CATCGTGTCTTGGGGAAAACTTCCATGTGGTCAGCCCAACTCTCCGTCGG
TGTATGTCCAGGTCTCCTCGTTCATAACATGGATAGCAGCCAACCAAAAG
AAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGGC
ACCGAGCGTTCTGACAATTCAGATGGAGTTCTGAGTCATTACTGGATCTA
TCACAGGAGTCCAAGCGGAGCTCGATATCAATTACGCCCCCGCCTGCCAC
TCATCGTCAGTCACTGTTTTTATTCATTAGGCATTTCTGGCGAACATGGA
GGCCAATACCAACGCTTATATTGACCTTGATTCGCCAGG
UFO11053.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phae2-RC | 1147 | CG16997-RC | 38..833 | 8..803 | 3980 | 100 | Plus |
| Phae2-RB | 886 | CG16997-RB | 38..833 | 8..803 | 3980 | 100 | Plus |
| Phae1-RB | 1248 | CG16996-RB | 319..1026 | 89..796 | 1080 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12111147..12111942 | 8..803 | 3980 | 100 | Plus |
| 2L | 23513712 | 2L | 12109735..12110442 | 89..796 | 1065 | 76.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:07:18 has no hits.
UFO11053.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:04 Download gff for
UFO11053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16997-RB | 10..816 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:29 Download gff for
UFO11053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phae2-RB | 33..839 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:23 Download gff for
UFO11053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phae2-RB | 33..839 | 1..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:23 Download gff for
UFO11053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12111142..12111948 | 1..811 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:29 Download gff for
UFO11053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12111142..12111948 | 1..811 | 99 | == | Plus |
