UFO11056.5prime Sequence
1116 bp (974 high quality bases) assembled on 2012-02-08
> UFO11056.5prime
CAGTCGACATGTACATAATTTAAAAGAGATTTTCGAAAACAAAATGACTT
GCGATGATACCACCGAAGCGCTCGCCACTCACATGTGTGAGCTGTTGGAG
TTTTATATGCTGCCGGAGCTGAAGGAGGACCTGGACAACATTCAGCTGGA
GACGTCGCAATTCGACAGCTACCATTCCCTACTTATCCAGGATCTGCCAA
AGCTCTACGATTTGGTGCAGGAATTCCTCCTGAAAAGTGGTGATGCAGGA
CACGAAGAGCTAAGATTCAAGCTCCTCCTGCTGATTTGCGAATTGACAGC
TTCGCCTACAATTTACCAACTAAAGGACGACTCTGGTAATCTCCTGAAGT
ATGCTAATGATTTGGCTAGTAAGCTGTCTTCCCATTGGTGGGAGTCGACG
GATGATCAATTCCTGAAATACTACGAGAAGAAACTGCACAGGGATTGCTG
GAAGAGACAACTAGGAGCTGTGCATGGTTTCGGCAGATATCTAGAGCTTC
GTTACGGAAAGAAATCCGCAATGTCCACCCAAATGTTGGCTTTTGCACTA
TCCGTGGGTCTTAATGTGCGCGAATGCTATGATACTATCTACAAACAACT
TGGGGTCAAGATCTTCTCAGTGATGTTAAAATTTAGCGACTCCAAGGACA
TTCAGGAACTGAACGTGCACAGTGTGATCTATGACCATGCCCTCAAGGAT
GTCTACAACATGGACTCAATTGAAGCCATCGAATCTGTTTGGAACTGCCT
GTATTTCTGTCTTGATCACTTTGTAGATCTAGATGCTTTCACGTGGAACC
AATGCGACGACATGCTGGAACGCCTCATTCAAACGTGACAATGGCCTCCA
GCCCAAAAGTTTTAATCTGCCTGCTGCAGTATATCATCCGATTAGGATAC
TACTTCACATCATCGCAGCGATGTGATAACTGCTTTGGCCATGGATATAT
GCGAACCAAATAACTGGTAGCGTGTCGGGACGTATGCCTTGCTCTAATGT
AGCACAGCTATCGTTGGCCAAGGCCATCCTACAATGCCTGTCCTGAGTCG
GCAGCTGCTCAGGTGTCCAGGTTGCACTGCCTTACTGATACACTAGCTAA
ATGCTATCTGTTGCAT
UFO11056.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16734-RD | 1393 | CG16734-RD | 11..1125 | 12..1110 | 5005 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9255062..9255309 | 12..259 | 1240 | 100 | Plus |
| 3R | 32079331 | 3R | 9255360..9255598 | 258..496 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 9256071..9256320 | 793..1034 | 810 | 94.8 | Plus |
| 3R | 32079331 | 3R | 9255860..9256015 | 638..793 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 9255661..9255804 | 495..638 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:07:24 has no hits.
UFO11056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:06 Download gff for
UFO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1071 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:32 Download gff for
UFO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1071 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:27 Download gff for
UFO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16734-RD | 7..1071 | 9..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:27 Download gff for
UFO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9255860..9256015 | 638..793 | 100 | -> | Plus |
| 3R | 9255362..9255598 | 260..496 | 100 | -> | Plus |
| 3R | 9255663..9255803 | 497..637 | 99 | -> | Plus |
| 3R | 9255058..9255309 | 9..259 | 99 | -> | Plus |
| 3R | 9256072..9256346 | 794..1056 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:32 Download gff for
UFO11056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5080780..5081031 | 9..259 | 99 | -> | Plus |
| arm_3R | 5081084..5081320 | 260..496 | 100 | -> | Plus |
| arm_3R | 5081385..5081525 | 497..637 | 99 | -> | Plus |
| arm_3R | 5081582..5081737 | 638..793 | 100 | -> | Plus |
| arm_3R | 5081794..5082068 | 794..1056 | 94 | -> | Plus |
