UFO11057.5prime Sequence
1139 bp (1050 high quality bases) assembled on 2012-02-08
> UFO11057.5prime
CAGTCGACATGAGCTCTGTTGTATTGTTTGCAGTCTCATTTATTCTTGTT
CTAAGCTGGATAGCTGAGGGCTACAGAGATCGCCAAAACTATGTAATTTC
AGTGGAGGAGAAGATGGACCTGCTGGAGAAAGATAGAGAACTCATTATCG
TACTCGATAGTTATGCAACTGAGCTGAATGAAAAAATCATCATGTTGAAA
AGAATAGTTAAGGAGTTTAAACAGCCTTTAGAAAAGGCTAAAAACAGGGA
GGAGGAGTACTTGTCCAATCCCATAGACAGCTTATCCCTCATGAGGCAGA
TGCACGAGGATTGGGAAAAGGTGGAGAAGCTCTTAAAGAAGCCAGTGGGG
CAAGAGAAAATTGCATTAGTCGAGAAAATGCGAGAGGATCTCCCGGTGGA
AAACGATCTGATGGAGGCCAATCAAGCCATGTTTCGTATACTACATACAT
ATGATTTGGAGCCAAAGGATGTGTCTGCAGGCTGGATTGATGGAGTTCAA
TATGGTGGTAAGATGTCTGCCAGTGATTGCTTTACCATGGGAACGTTCTC
CTTCATGGCGGGTAGCTACCAAATTGCCTCCAAGTGGCTGAGTGCAGCCA
AGGATTTGTTGGTGGATCAACCACGTAAATACCATGAGGTGATGGGGATC
ACCAAGGCGGATGTTACATTGCTACTCGCTCGCTCTCTAATAGCCAGTGG
CAATGTATCCATCGCAACCGACATGCTGATGCGGGATTTCATGTTTGGTG
AAGCTGGTAGTGCACTCACTGTACACTTTTTGAGGAACAAACCAAAGCCA
AGTATTAACTTGGAGTCCTGAGAATCCGATGAATCCTTCAATCAACTCTG
TCGATCCTCGAGCAGAAGACAGATGGGTGAATCCAAGCCCTCGAGGCTTC
ACTGTCGCTATATACCATTACTACGCCCTTCTGAAACTAGCCCATTTCGA
ATGAGACTTTCTTTGGATCCGTATGTGATTTTTATCACATGTCTAGTGAT
GCTGAAATGAAAGCTGAGCGATGGCAGCATTCTGGAGCGTGCAAAGTATT
TCAGTGAAAGGCTCTGAATGAATAAATCCCAGTAGAATCAGCGAATGGCC
TGCTCTACCAAAACTCGATCTGAGTACGAGTTAACCGCA
UFO11057.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31016-RC | 1633 | CG31016-RC | 7..1119 | 9..1099 | 4870 | 97.2 | Plus |
| CG31016-RB | 3923 | CG31016-RB | 7..1119 | 9..1099 | 4870 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30607102..30607392 | 699..983 | 1180 | 96.9 | Plus |
| 3R | 32079331 | 3R | 30606853..30607048 | 505..700 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 30606195..30606388 | 9..202 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 30606436..30606589 | 201..354 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 30606641..30606793 | 353..505 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:07:27 has no hits.
UFO11057.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:06 Download gff for
UFO11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31016-RB | 1..1016 | 6..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:34 Download gff for
UFO11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31016-RB | 1..1016 | 6..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:28 Download gff for
UFO11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31016-RB | 1..1016 | 6..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:28 Download gff for
UFO11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30606438..30606589 | 203..354 | 100 | -> | Plus |
| 3R | 30606643..30606793 | 355..505 | 100 | -> | Plus |
| 3R | 30606854..30607047 | 506..699 | 100 | -> | Plus |
| 3R | 30607103..30607413 | 700..1000 | 96 | -> | Plus |
| 3R | 30606195..30606388 | 9..202 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:34 Download gff for
UFO11057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26432160..26432311 | 203..354 | 100 | -> | Plus |
| arm_3R | 26432365..26432515 | 355..505 | 100 | -> | Plus |
| arm_3R | 26432576..26432769 | 506..699 | 100 | -> | Plus |
| arm_3R | 26431917..26432110 | 9..202 | 100 | -> | Plus |
| arm_3R | 26432825..26433135 | 700..1000 | 96 | -> | Plus |
