UFO11059.5prime Sequence
1125 bp (1047 high quality bases) assembled on 2012-02-08
> UFO11059.5prime
CAGTCGACATGGAGCGAATAACATCGCCGGTGCTCGCGTATCCACGTGGA
TATACCGAATTTTCGGATCACAAAATGTCGAATATACCGCCGTATTTGGT
GTTCTTCTTCCTGGCCTTCATTTCCTGTGCGGTCACCTTCTGCTGCCTGA
GATTCTGCATTTGGGTGTGCTTCGAGGCCAGGGATTCCAGGAGTCGCAGA
CGCCGACATGATCGTAATGTATTCAACGCACAGGAGGATCCTTCATCGAA
CCGCTATGGCGACATTTTCTTCATCGAACCCGGCAGCGTGGAGGCCAACC
GCATTCGCGATCAACTGGAAAAGGATGAAAAGGATTTACCCAGCTACGAC
GAGGTGATGCGCATGTGTAACCTGACCACTCCCACAGCAGCAGCGGCTGG
AATGCCTGTTCCCCAATCGCCCCTCGGTGTACCCAGTCCCATTGGAATCG
CGGCACTGCCGGCGCCACCGTATTCGGAGACAGATCCACATTCCTCGTCC
GCCGCAGAAGCCACTGTCATCGCAATGGAACCGATGGAGCCATCCACCTC
CCGCGCGGCACAGATTCCACCCAGCTCCGGATCTGGTCCTCCTGCTCCAT
TGCCAACGACAGCGGTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAA
ACCGGGGGCGAAGAAGTGTCCATATTTGCACGTTTAAATCAAACTGGGTG
ACTCCACCCAGGGATGCCTGAAACGAAAAACATATTTCTCCAAATAACCT
TTTAGGAAAATAAGCCAGGGTTCCA
UFO11059.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12963-RE | 1108 | CG12963-RE | 284..893 | 8..617 | 3050 | 100 | Plus |
| CG12963-RD | 814 | CG12963-RD | 186..599 | 204..617 | 2055 | 99.8 | Plus |
| CG12963-RJ | 782 | CG12963-RJ | 159..567 | 209..617 | 2045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15561814..15562221 | 210..617 | 2040 | 100 | Plus |
| 2R | 25286936 | 2R | 15559520..15559722 | 8..210 | 1015 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:06:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 324..283 | 111 | 73.8 | Minus |
UFO11059.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:00 Download gff for
UFO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RE | 8..617 | 8..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:18 Download gff for
UFO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RE | 284..893 | 8..617 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:13 Download gff for
UFO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12963-RE | 284..893 | 8..617 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:13 Download gff for
UFO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15559520..15559722 | 8..210 | 100 | -> | Plus |
| 2R | 15561815..15562221 | 211..617 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:18 Download gff for
UFO11059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11449320..11449726 | 211..617 | 100 | == | Plus |
| arm_2R | 11447025..11447227 | 8..210 | 100 | -> | Plus |
