UFO11060.5prime Sequence
1072 bp (1027 high quality bases) assembled on 2012-02-08
> UFO11060.5prime
CAGTCGCCATGCATTTAAGAAAATTTTTGTATTGTTGGCCATTGAAATAT
GGCGTTATTACTGTGGGCATTGCTTTTGGACTCACGGACTTCATCGTGGG
CAGCATTGCATGGGACATGGTTATCAGAAACAAATATCCAGACTATGTGG
TCGAGTTCTTCAGAACCATGGACACCCGAATCTGTGTGTCCGGATTTGCC
ACCGTTTTCTGGTTGATGATGACCAACCACTTTCTTTTGATCTATGCCGT
CTTTTACCACAAACTTTTGATAATCGGAACTTGGCTGTTGATAAACTACA
TGGTATTTTTGTTCACCCTTGTCACCGTGTTGTTGGATAGCTTGCTAATC
CTTAGAATAATTGCCCTCGGATACTGTTTGATCGTGGTGAAGTCCTATTA
TAGTGAGTTGGCTGAGTCTCAGGAGGAATCATCCGATTCCAGTGAGGAAT
CAACTAGTAGTGATAGCGATGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACAAATTCTCAAT
AAACCCTTTAGGGAAATAGGCAGGTTTCACGTAACACGCACATCTTGCGA
ATATATGTGTAGAACTGCGGAAATCGTCGTGTATTCACCTCCAGAAGCGA
TGAAAACGTTCAGTTTGCTCAG
UFO11060.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42493-RA | 590 | CG42493-RA | 67..528 | 9..470 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11778592..11778840 | 9..257 | 1245 | 100 | Plus |
| 2R | 25286936 | 2R | 11779064..11779173 | 361..470 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 11778905..11779007 | 258..360 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:07:03 has no hits.
UFO11060.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:00 Download gff for
UFO11060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42493-RA | 15..479 | 9..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:20 Download gff for
UFO11060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42493-RA | 67..531 | 9..474 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:14 Download gff for
UFO11060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42493-RA | 67..531 | 9..474 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:14 Download gff for
UFO11060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11778592..11778840 | 9..257 | 100 | -> | Plus |
| 2R | 11778905..11779007 | 258..360 | 100 | -> | Plus |
| 2R | 11779064..11779173 | 361..470 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:20 Download gff for
UFO11060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7666097..7666345 | 9..257 | 100 | -> | Plus |
| arm_2R | 7666410..7666512 | 258..360 | 100 | -> | Plus |
| arm_2R | 7666569..7666678 | 361..470 | 100 | == | Plus |
