UFO11061.5prime Sequence
1128 bp (1032 high quality bases) assembled on 2012-02-08
> UFO11061.5prime
CAGTCGACATGAGCAGTCAAATTAAAAAGTCCAAAACGACCACCAAGAAA
TTGGTGAAATCATCTCCGAAAGCTCAACTTCCAAAAGCTGCGGCACAGAA
TCAAATTTTTAGTTGCCAATTCGAGGTGTTTGGTCATGTGCAAGGTGTCT
TCTTTCGCAAGGCCATTGAGCTGGGCATAACTGGCTGGTGCATGAACACA
ACTCAAGGAACGGTTCAGGGAATGCTCGAAGGATCCTTGGACCAAATGAC
TGATATGAAATACTGGCTGCAGCACAAGGGAAGTCCTCGTTCGGTGATCG
AAAAGGCTGTATTCTCCGAGAATGAACCACTGCCCATCAACAACTTTAAG
ATGTTCTCGATTCGTCGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC
GATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCAGAGCGA
TGAAACGTTCAGTTTGCTCATGGAAACGTGTACAAGGTGACACTATCCAT
ATCACAGCTCACGTCTTTCATTGCATACGAAATCCGGATGGACAATCATC
AGCCGGCAGATGTGAATAGCGATAACTTGTGCCTATTTTTCTACGCTCAA
GCCGTAATCAGCTGACGGCTTGTTAGGT
UFO11061.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34161-RB | 553 | CG34161-RB | 66..425 | 9..368 | 1800 | 100 | Plus |
| CG34161-RC | 563 | CG34161-RC | 66..440 | 9..368 | 1640 | 96 | Plus |
| CG34161-RA | 577 | CG34161-RA | 66..440 | 9..368 | 1640 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10581500..10581637 | 146..9 | 690 | 100 | Minus |
| 2L | 23513712 | 2L | 10581094..10581205 | 368..257 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 10581260..10581358 | 257..159 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:07:40 has no hits.
UFO11061.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:09 Download gff for
UFO11061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34161-RB | 26..385 | 9..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:43 Download gff for
UFO11061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34161-RB | 66..425 | 9..368 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:34 Download gff for
UFO11061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34161-RB | 66..425 | 9..368 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:34 Download gff for
UFO11061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10581502..10581637 | 9..144 | 100 | | Minus |
| 2L | 10581094..10581205 | 257..368 | 100 | <- | Minus |
| 2L | 10581261..10581355 | 162..256 | 100 | <- | Minus |
| 2L | 10581424..10581440 | 145..161 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:43 Download gff for
UFO11061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10581502..10581637 | 9..144 | 100 | | Minus |
| arm_2L | 10581094..10581205 | 257..368 | 100 | <- | Minus |
| arm_2L | 10581261..10581355 | 162..256 | 100 | <- | Minus |
| arm_2L | 10581424..10581440 | 145..161 | 100 | <- | Minus |
