UFO11062.5prime Sequence
1165 bp (1056 high quality bases) assembled on 2012-02-08
> UFO11062.5prime
CAGTCGACATGAATGCTTTGAATGCTTTTGGAATGGCCATCGGCTGGATG
GACATTGCGGGAGTTTTGTTCTTCGAAATGATAATGTTCTATATGATGCG
ACGTCGTCGATTGGCACAAAAATCAGAAGTTGCATCGATTGAAGCACAAG
AGAAGTGCCATAGAGATTCATTGCCCAATCTCTTGACAAGGAAAAAGCTG
AGTGAAAGCGAAAACATTTGGATATTCTGGGGCTACCTGTTGATGCTGAA
TATTTGGATTGGGGTCACTCTGCTCATGATAGCTGGCATCTCATTTGTGG
GTGAAAACAAAAACCGAAGCTTAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAGGG
TGAACACTATCCATATCACAGCTCACCGTCTTTCATGCATACGAAATCCG
GATGAGCATTCATCAGCGGCAAGATGTGAATAACGCGGATAAACTTGTGC
TTATTTTTCTACGTCTTAAAAGCCGTATAATCAACTGACGTTGTTAAGTA
CCTGACCACCTGACTGAATGCTCATGTCTTACAGTGCCATGGGAAATATC
CACCGGGGGTATATC
UFO11062.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43127-RC | 698 | CG43127-RC | 37..351 | 9..323 | 1560 | 99.7 | Plus |
| CG43127-RD | 687 | CG43127-RD | 37..324 | 9..296 | 1440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10625395..10625563 | 177..9 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 10625206..10625335 | 307..178 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 892..949 | 127 | 72.9 | Plus |
UFO11062.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:10 Download gff for
UFO11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43127-RC | 34..351 | 3..323 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:44 Download gff for
UFO11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43127-RC | 34..351 | 3..323 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:36 Download gff for
UFO11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43127-RC | 34..351 | 3..323 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:36 Download gff for
UFO11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10625206..10625335 | 178..307 | 100 | <- | Minus |
| 3L | 10625395..10625566 | 3..177 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:44 Download gff for
UFO11062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10618306..10618435 | 178..307 | 100 | <- | Minus |
| arm_3L | 10618495..10618666 | 3..177 | 98 | | Minus |
