UFO11066.5prime Sequence
1113 bp (1015 high quality bases) assembled on 2012-02-08
> UFO11066.5prime
CAGTCGACATGGCCCGCATCACCAGTATTCTGGACTTGGACCCCAGTTCT
CTGTTGTTCATCTTCAAGCTTCTAAGCTTGGAGGACCAGTTGCACTTGGC
GCGATGCTGTCGCATTTTTAGGGATGCCTTTCTTCGCCTGCATCGCCATG
ATTTCCAGGATGTTGTTGACAAGGATATGAGTATAAGGACTCTGGAGGAT
TGGCGCACCTTTCTGTGGCTCTGTGGCAGTCGCATCGGTACACTGGAATC
CCACTTTGACGATGATCACCCGCTGCAGCTGCTCCCGATGATCAGCAGAC
ACTGCTACCGACTGAAGTCCATCTCTATATACAATGCAACAGTGGCACGG
GCGCAACCGTATTTATTGAGGATGAGCTCCCTGGAAAAGGTGCACGTGCG
TAACTACAAGAGCACCAGCAAGGATCTAATAAAAGCCATTGGGATACACC
TTCCGCGGGTCAACAGTCTGAGCCTGGAGAGCTTTGAACGCAAGGAGTTA
CAAGAAGTACGTCAGTTTAGCGAGATGCTGGAACTTGGCTTGTACGACGA
CGTGACCGCCTCGGAATTCGCAACAATTGTGAAACCCATGAGGAAGCTGC
GATGCCTTCAGCTGCGCAACGCCAAACGCTTTCTGACTACCAGCAATCTC
AGGATGCTGGCCACCAACTGCCGCCACCTGGAGAAGCTGACGTTCAATGA
CTGCGACGCCGATCTGTTGGTCCTGCCGCAGTTTGTAAACCTCAAGTACC
TGCAATTATACTGCTCGGAGGATATGAAAACGCGCCTGTTCAGGCACTGG
CCAAAAGCCAGTGCTCCATTCAGTTGGAATACCTCATCCTGCACCGCAAA
CGCTGGATTGACGAGGAGCAGGCGCAGTACATCAGTGCTTTGAAGTGTCT
CCGGTGGCTGGTCTGCAAGCCTCGTGACGATCTGTGTGTTCACACTTGGC
GAGTGAGTCGATAGAGTGCTTTCCATACAGTCGCTCGTGAGATGAGAACG
CAGCTCCTCCTTTTGGTGCACATGACGCTCGTATTGACATTTGCTATGCT
TGGCATCCAGACGCTCGTCTGAAACGCTACAGCTATCGACGCTCACTCAT
CAACCTAAGCATG
UFO11066.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32221-RB | 1606 | CG32221-RB | 132..1151 | 9..1018 | 4830 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19834801..19835290 | 9..498 | 2450 | 100 | Plus |
| 3L | 28110227 | 3L | 19835354..19835799 | 499..943 | 2180 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:07:53 has no hits.
UFO11066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:12 Download gff for
UFO11066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32221-RB | 112..1131 | 9..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:51 Download gff for
UFO11066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32221-RB | 132..1151 | 9..1018 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:42 Download gff for
UFO11066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32221-RB | 132..1151 | 9..1018 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:42 Download gff for
UFO11066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19834801..19835290 | 9..498 | 100 | -> | Plus |
| 3L | 19835354..19835883 | 499..1018 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:51 Download gff for
UFO11066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19827901..19828390 | 9..498 | 100 | -> | Plus |
| arm_3L | 19828454..19828983 | 499..1018 | 97 | | Plus |
