UFO11070.5prime Sequence
1100 bp (980 high quality bases) assembled on 2012-02-08
> UFO11070.5prime
CAGTCGACATGAGTTCAATGCAAATACCCAAAGCTGTGTACATCCTGGTG
ACGCTGATTGTCTGCCCACCTGCGAGGCTTTCAATTTCAGCACCTTCAGT
TACCAGAGAACCTGTACGAGATCGCTGTGATTTCCCCCAAAATGTCGATT
GCGTGGAGTCCGAGTGCTCCATCTACTCCAATGCGTATCATTTGCGCTAT
GTTCCCAGCAAGGTTTCCTGCCAGAAGTACTTCATCTGCGGCAACGGAAT
TCCCAGGGAGCAAACCTGCACTGCTGGCCTCCACTTTAGTACCAAATGCG
ATTGCTGCGATATTCCATCTAAGTCGGACTGTCAGATCCCAGCAGTGGAA
AGAAAAGTGCAGCAACTTTCACGACTTTCACCCGTTACTACTGTAGGAAT
CTGCCCCCCATCCGGGGTCCATTTCTATGTCCATGAGTCTCGACGAGATG
CCTATTACTATTGCGTGGATGGACATGGTCTGGTTCTGGATTGTTCGGCG
GGTCTTTGGTACGACCCCACGGTTCAGGAGTGTCGTGAACCCCAGAATGT
GGGCATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTA
CTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCATCAG
CACCTTGTCGCCTGCGTATAATATTGCCCATGGTGAAAACGGGGGCGAAA
AGTTGTCATATTGTCCACGTTTAATCAAAACTCGTGAACTCACCCAGGAT
GCCTGAGACGAAAACTTATCTCAATAACCGTTAGAAATAGGCAGCTTTCA
CCGTACACGCCCAATCTGGCAATATTGGTAGAACTGCCGGAAATCGTCTG
UFO11070.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10140-RA | 969 | CG10140-RA | 488..926 | 119..557 | 2195 | 100 | Plus |
| CG10140-RA | 969 | CG10140-RA | 304..415 | 9..120 | 560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13439360..13439583 | 557..334 | 1120 | 100 | Minus |
| 3L | 28110227 | 3L | 13439644..13439860 | 335..119 | 1085 | 100 | Minus |
| 3L | 28110227 | 3L | 13439933..13440044 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:07:30 has no hits.
UFO11070.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:07 Download gff for
UFO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10140-RB | 318..869 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:36 Download gff for
UFO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10140-RB | 318..869 | 9..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:30 Download gff for
UFO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10140-RA | 304..415 | 9..120 | 100 | -> | Plus |
| CG10140-RA | 490..929 | 121..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:30 Download gff for
UFO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13439357..13439581 | 336..561 | 99 | <- | Minus |
| 3L | 13439644..13439858 | 121..335 | 100 | <- | Minus |
| 3L | 13439933..13440044 | 9..120 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:36 Download gff for
UFO11070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13432457..13432681 | 336..561 | 99 | <- | Minus |
| arm_3L | 13432744..13432958 | 121..335 | 100 | <- | Minus |
| arm_3L | 13433033..13433144 | 9..120 | 100 | | Minus |
