Clone UFO11072 Report

Search the DGRC for UFO11072

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:110
Well:72
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptIde-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11072.5prime Sequence

1099 bp (1050 high quality bases) assembled on 2012-02-08

> UFO11072.5prime
CAGTCGACATGTATCTTACGTGCAGAAAATCGATTTTTGCCTTAACAGCG
GTTTTTGGTCGACGGTCAAGTGCGTTGAGGGCCAGCATTTCAGTAACACA
TCGAACGATTGGCACGCTTATAAAACCCAAGATGACAATAGCCGAAAGCT
CGCAAAAGTCCGCAACTAGGAAGCCAGACAGCATGGAGCCCATATTGAGG
CTGAACAACATTGAAAAGTCGCTGCAGGACACACGCGACTACCGCGGATT
GCAACTAGAAAATGGACTAAAGGTCCTGCTCATCAGCGATCCCAACACAG
ATGTCTCGGCGGCAGCGCTGTCCGTGCAAGTGGGCCACATGTCTGATCCC
ACGAACCTGCCTGGATTGGCCCACTTTTGCGAGCACATGCTGTTCCTCGG
CACCGAGAAGTATCCGCATGAGAATGGCTACACCACATACCTTTCGCAGA
GCGGCGGAAGCAGCAACGCCGCCACCTATCCCCTGATGACCAAGTACCAC
TTTCACGTGGCGCCGGACAAGTTAGATGGAGCCTTAGATCGCTTCGCGCA
GTTCTTCATAGCCCCCTTGTTCACGCCCAGTGCAACTGAGCGGGAAATCA
ATGCGGTAAACTCTGAGCACGAGAAAAACCTGCCCAGCGATCTGTGGCGC
ATCAAGCAGGTGAACCGCCACCTGGCAAAGCCTGACCATGCCTACAGCAA
GTTCGGCAGCGGCAACAAGACCACCCTATCCGAAATACCCAAGTCCAAGA
ACATTGATGTGCGGGATGAGCTGCTAAAGTTTCACAAGCAGTGGTACTCC
GCCAACATAATGTGCCTGGCTGTCATTGGAAAAGAATCGCTGGACGAACT
GGAGGGCATGGTATTGGAGAAGTTCTCCGAAATAGAGAACAAAAACGTCA
AGGTTCCAGGTTGGCCACGCCACCCCTACGCCGAGGAGCGCTATGGACAA
AAGGTGAAAATAGTGCCTATCAAAGACATCCGATCGCTGACGATAGCTTT
ACCACAGACGATTTGACCCAGTCTACAAGTCAGGCCCTGAATAACTATTT
GACCCACCTCCATCCGGTCCACGAGGGCCAAGGCAGCATTTATTCCGGA

UFO11072.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Ide-RB 3439 CG5517-RB 224..1304 9..1091 5230 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20374896..20375170 608..334 1375 100 Minus
3L 28110227 3L 20374615..20374844 834..605 1150 100 Minus
3L 28110227 3L 20374362..20374566 1035..833 910 98.5 Minus
3L 28110227 3L 20375227..20375363 334..198 685 100 Minus
3L 28110227 3L 20375419..20375555 200..64 685 100 Minus
3L 28110227 3L 20375616..20375673 66..9 290 100 Minus
Blast to na_te.dros performed 2014-11-27 21:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 2402..2470 902..970 120 63.8 Plus

UFO11072.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:09 Download gff for UFO11072.5prime
Subject Subject Range Query Range Percent Splice Strand
Ide-RB 217..1309 1..1097 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:41 Download gff for UFO11072.5prime
Subject Subject Range Query Range Percent Splice Strand
Ide-RB 218..1310 1..1097 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:33 Download gff for UFO11072.5prime
Subject Subject Range Query Range Percent Splice Strand
Ide-RB 218..1310 1..1097 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:33 Download gff for UFO11072.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20374362..20374564 835..1035 98 <- Minus
3L 20374615..20374843 606..834 100 <- Minus
3L 20374899..20375169 335..605 100 <- Minus
3L 20375227..20375361 200..334 100 <- Minus
3L 20375420..20375554 65..199 100 <- Minus
3L 20375618..20375677 1..64 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:41 Download gff for UFO11072.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20367462..20367664 835..1035 98 <- Minus
arm_3L 20367715..20367943 606..834 100 <- Minus
arm_3L 20367999..20368269 335..605 100 <- Minus
arm_3L 20368327..20368461 200..334 100 <- Minus
arm_3L 20368520..20368654 65..199 100 <- Minus
arm_3L 20368718..20368777 1..64 93   Minus