UFO11072.5prime Sequence
1099 bp (1050 high quality bases) assembled on 2012-02-08
> UFO11072.5prime
CAGTCGACATGTATCTTACGTGCAGAAAATCGATTTTTGCCTTAACAGCG
GTTTTTGGTCGACGGTCAAGTGCGTTGAGGGCCAGCATTTCAGTAACACA
TCGAACGATTGGCACGCTTATAAAACCCAAGATGACAATAGCCGAAAGCT
CGCAAAAGTCCGCAACTAGGAAGCCAGACAGCATGGAGCCCATATTGAGG
CTGAACAACATTGAAAAGTCGCTGCAGGACACACGCGACTACCGCGGATT
GCAACTAGAAAATGGACTAAAGGTCCTGCTCATCAGCGATCCCAACACAG
ATGTCTCGGCGGCAGCGCTGTCCGTGCAAGTGGGCCACATGTCTGATCCC
ACGAACCTGCCTGGATTGGCCCACTTTTGCGAGCACATGCTGTTCCTCGG
CACCGAGAAGTATCCGCATGAGAATGGCTACACCACATACCTTTCGCAGA
GCGGCGGAAGCAGCAACGCCGCCACCTATCCCCTGATGACCAAGTACCAC
TTTCACGTGGCGCCGGACAAGTTAGATGGAGCCTTAGATCGCTTCGCGCA
GTTCTTCATAGCCCCCTTGTTCACGCCCAGTGCAACTGAGCGGGAAATCA
ATGCGGTAAACTCTGAGCACGAGAAAAACCTGCCCAGCGATCTGTGGCGC
ATCAAGCAGGTGAACCGCCACCTGGCAAAGCCTGACCATGCCTACAGCAA
GTTCGGCAGCGGCAACAAGACCACCCTATCCGAAATACCCAAGTCCAAGA
ACATTGATGTGCGGGATGAGCTGCTAAAGTTTCACAAGCAGTGGTACTCC
GCCAACATAATGTGCCTGGCTGTCATTGGAAAAGAATCGCTGGACGAACT
GGAGGGCATGGTATTGGAGAAGTTCTCCGAAATAGAGAACAAAAACGTCA
AGGTTCCAGGTTGGCCACGCCACCCCTACGCCGAGGAGCGCTATGGACAA
AAGGTGAAAATAGTGCCTATCAAAGACATCCGATCGCTGACGATAGCTTT
ACCACAGACGATTTGACCCAGTCTACAAGTCAGGCCCTGAATAACTATTT
GACCCACCTCCATCCGGTCCACGAGGGCCAAGGCAGCATTTATTCCGGA
UFO11072.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ide-RB | 3439 | CG5517-RB | 224..1304 | 9..1091 | 5230 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20374896..20375170 | 608..334 | 1375 | 100 | Minus |
3L | 28110227 | 3L | 20374615..20374844 | 834..605 | 1150 | 100 | Minus |
3L | 28110227 | 3L | 20374362..20374566 | 1035..833 | 910 | 98.5 | Minus |
3L | 28110227 | 3L | 20375227..20375363 | 334..198 | 685 | 100 | Minus |
3L | 28110227 | 3L | 20375419..20375555 | 200..64 | 685 | 100 | Minus |
3L | 28110227 | 3L | 20375616..20375673 | 66..9 | 290 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 2402..2470 | 902..970 | 120 | 63.8 | Plus |
UFO11072.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:09 Download gff for
UFO11072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ide-RB | 217..1309 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:41 Download gff for
UFO11072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ide-RB | 218..1310 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:33 Download gff for
UFO11072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ide-RB | 218..1310 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:33 Download gff for
UFO11072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20374362..20374564 | 835..1035 | 98 | <- | Minus |
3L | 20374615..20374843 | 606..834 | 100 | <- | Minus |
3L | 20374899..20375169 | 335..605 | 100 | <- | Minus |
3L | 20375227..20375361 | 200..334 | 100 | <- | Minus |
3L | 20375420..20375554 | 65..199 | 100 | <- | Minus |
3L | 20375618..20375677 | 1..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:41 Download gff for
UFO11072.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20367462..20367664 | 835..1035 | 98 | <- | Minus |
arm_3L | 20367715..20367943 | 606..834 | 100 | <- | Minus |
arm_3L | 20367999..20368269 | 335..605 | 100 | <- | Minus |
arm_3L | 20368327..20368461 | 200..334 | 100 | <- | Minus |
arm_3L | 20368520..20368654 | 65..199 | 100 | <- | Minus |
arm_3L | 20368718..20368777 | 1..64 | 93 | | Minus |