UFO11074.5prime Sequence
993 bp (993 high quality bases) assembled on 2012-02-08
> UFO11074.5prime
CAGTCGACATGAGGATCCATCGGCATTTTGTGTTGGGTCTGCTCGGTGTG
CTCTGTTTGGCCATCGGAGGCAGTCAATCCAAGGCTGTGGTGGATCAGCA
GCCTGCAGCTTCCCAGGTGGATAGCAAAAGTGTCGCTCAGCAGAGGATCG
ATCTGGGATTGGGTCTGGGCGATGACCTGATCCACGACCACCATCACGAG
CACATAATCGAACATCACGAACATCATCACGAGCACCATGACCCCGGGTA
CTGGAAGAAGAAGGTCACTTGGAAGGAGGGATGGAAGAAAATTTGGAATC
CGGCTAAGAAACAAATCTGGAATCCTTCATGGAAGAAGATCTGGAAGCCA
CATTGGGTGAAAGTGCCCGGCTGGAAGGAAATACAGGTTCCAGCTTGGAA
ACAAATTTGGGTTCCTCACTGGAAAGAGATTTTAGTGCCAGCCTGGAAGG
ATATTCAAGTACCCGATTACAAGCAGATCTGGACACCAGAACTAGTCAAG
GTTGGCATTCCCGGAGAAAAATATTTGGGCAAGGATCACGAAGGTTGGGA
GTACACCAGCCACGATTTGTGGAAGAAGAAAGTGGTCTGGAAATCGCACT
GGAAGAAGATCTGGAAGCCAGCCAAGAAGCAAATCTGGGTGCCAGAGAAG
AAATTGGAGTGGAAGGAGGCATGGAAGCAGTACTGGAAGCCAGCGAAGAA
GGAAATCTGGACCGATAAATTGGAATGGAAGGAGGCATGGAAGCAGATTT
GGGTGCCCGGCTGGAAGGAGATCTGGGTGCCTGGATGGAAAAAGATCTGG
AAGCCAGTGGTCATTTCAGAATGGTTCCCCTCGCCCGATCACCACGATCA
TCATCATCATGAGCACCATGATTGGGATCGCAAGGACACAGTGTTACGGC
CACCAGGACGGCAGATGGCAAAGATAGTGGTCTGGAAACGAGATGACACC
AATGCTGCTGGCAAGCCACATGCTGCAGCCAGGGTGGCATTGG
UFO11074.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15615-RB | 1429 | CG15615-RB | 148..1127 | 8..982 | 4770 | 99.4 | Plus |
| CG12164-RB | 1554 | CG12164-RB | 575..685 | 504..614 | 210 | 79.3 | Plus |
| CG12164-RA | 1404 | CG12164-RA | 575..685 | 504..614 | 210 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16794395..16794701 | 338..32 | 1535 | 100 | Minus |
| 2R | 25286936 | 2R | 16793437..16793686 | 968..722 | 1120 | 98.4 | Minus |
| 2R | 25286936 | 2R | 16793740..16793890 | 727..577 | 740 | 99.3 | Minus |
| 2R | 25286936 | 2R | 16794091..16794183 | 502..410 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 16793954..16794034 | 578..498 | 405 | 100 | Minus |
| 2R | 25286936 | 2R | 16794242..16794317 | 412..337 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 7312516..7312626 | 504..614 | 210 | 79.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:08:15 has no hits.
UFO11074.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:18 Download gff for
UFO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15615-RB | 141..1131 | 1..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:06 Download gff for
UFO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15615-RB | 141..1131 | 1..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:56 Download gff for
UFO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15615-RB | 141..1131 | 1..988 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:56 Download gff for
UFO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16793417..16793685 | 723..988 | 97 | <- | Minus |
| 2R | 16793745..16793888 | 579..722 | 100 | <- | Minus |
| 2R | 16793954..16794031 | 501..578 | 100 | <- | Minus |
| 2R | 16794093..16794182 | 411..500 | 100 | <- | Minus |
| 2R | 16794244..16794315 | 339..410 | 100 | <- | Minus |
| 2R | 16794395..16794700 | 33..338 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:06 Download gff for
UFO11074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12680922..12681190 | 723..988 | 97 | <- | Minus |
| arm_2R | 12681250..12681393 | 579..722 | 100 | <- | Minus |
| arm_2R | 12681459..12681536 | 501..578 | 100 | <- | Minus |
| arm_2R | 12681598..12681687 | 411..500 | 100 | <- | Minus |
| arm_2R | 12681749..12681820 | 339..410 | 100 | <- | Minus |
| arm_2R | 12681900..12682205 | 33..338 | 100 | <- | Minus |
