UFO11076.5prime Sequence
1160 bp (1038 high quality bases) assembled on 2012-02-08
> UFO11076.5prime
CAGTCGACATGGAGATTGAAAATAAAGTCCAGTCGGCAGAGAAATGTCCT
TTGCAGATAATTCAGCACAATGACGCTACGTTTATTGGTTGCGATTCAAG
CAACCGCGATTTGGAAAAGTGCCGCAGCTGCCTCACTTCCTTCTGCCGTA
AACCCATTAAGATTTACCATAATTCCCGGAACTATCTGGCCTGCGAGGTC
CAGAGATCACAATCTATAAATTCCATAAAGTCACTGCCAGTCAAATTTCC
ATCAACACCAAATAGATCACTTAACACAGAAAAGGATTGGTCGCATGGTA
AAAGGTGTTTACAATGCGCAGCTCCCAAGTGCAAAACATCTTCCAGAAGT
TCCATTCAGTCGAAAAAACTGAAAAAAGATAAGAAGTCTCTGTTAAAGGA
ATTTGAAATATACAAAATTCCTATCATTCGACGCAAGCCTATAAAACAAG
CTGTACTAAGGGAAACCAATAAGTACCGAAGGCTTCACAACGCCAATCCC
CTGAAAATGGATGAAAAACTTTGTTCCTATGCACAGGAGTGGGCAGATCA
TTTGGCTGATCTGAACAAACTGGAAACTCGACCTAATCCTCTTTACGGCG
AGAATATTATGCGTGTCCGGAGATCCAAATTCTCCGTGGATCAAATACTG
AAACTCTGGTACCAAGAAAAATACAACTACGATTACTTAAAGCCAGGCTT
TAATTTGTACACTGGACATTTTACCCAGTTGGTTTGGAGAGAGTCAGAGT
TCCTGGGAGTGGGCGTGGCATGCGATGTTTCCTCCATTTGGATTGTGTGC
AATTACCATCCGCCTGGAAATGTAAGCGAACATTTCAGGAAAATGTCCTG
CCTAGAAAATTCCTTCTACTTAAATCGGACTTGGATGCCAAGGAAACTAG
AAAATCGAAACATCACAATTTAAAAGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGTTCATAATCATATCATAATCATAATCATA
TCACACTAGCCTAGGAGATCTGGTCATGACTAGTGCTTGATTCTCACAAT
AAAAACGCCGGCGGCCACGAGCGTTCTGAACAATCCGAATGGAGTCTGAG
GTCATTACTGGATCATCCTGGATTCCAGCGAGCTCGGAATTCAATACGCC
CGCCCTGTGC
UFO11076.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34049-RB | 967 | CG34049-RB | 11..928 | 9..925 | 4565 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2264772..2265311 | 548..9 | 2700 | 100 | Minus |
| 2L | 23513712 | 2L | 2264483..2264709 | 775..549 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 2264270..2264420 | 925..776 | 705 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-27 21:08:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 7340..7408 | 364..435 | 119 | 65.3 | Plus |
UFO11076.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:19 Download gff for
UFO11076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34049-RB | 11..928 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:09 Download gff for
UFO11076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34049-RB | 11..928 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:59 Download gff for
UFO11076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34049-RB | 11..928 | 9..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:59 Download gff for
UFO11076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2264270..2264420 | 776..925 | 99 | <- | Minus |
| 2L | 2264483..2264709 | 549..775 | 100 | <- | Minus |
| 2L | 2264772..2265311 | 9..548 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:09 Download gff for
UFO11076.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2264270..2264420 | 776..925 | 99 | <- | Minus |
| arm_2L | 2264483..2264709 | 549..775 | 100 | <- | Minus |
| arm_2L | 2264772..2265311 | 9..548 | 100 | | Minus |
