UFO11077.5prime Sequence
1159 bp (1040 high quality bases) assembled on 2012-02-08
> UFO11077.5prime
CAGTCGACATGTGGCTAAAGGCGCTTGTTCTACTGCTTTCGATTCGATAT
TTGGCGGCCACGTGCAATGTGTGTCAAAGTGATAGCAATGTCGCTTGTCA
CAGTGAAACCACTTTTTCCATCTGCTATGACGGAGTTCCATCGTATGATC
TCTTGCCATGTCCAAAGGACTTTTATTGCACGGATGGCTTTTACACTTGC
TATCAAAATGCTAATCCGGTTTGCAAAACAGAGGAGGACACTTCCACCAC
CGAGATCCAGACAACCAGTACAACCACTCCTAGCCCCATTACCACGACAA
CCACTAAGAACCCAACTACCACTGCTACCCCAATTACCACAACAACCACT
GAGATCACGACTACAGAAGCTCCGTGGAATGCCGACGATATCTGTCAGCA
ATACACTAAAAACACCTTTTTCGAAAACGAAGATGATCCCACCTGCACCA
CTTTTATAACCTGTACAGTTGATAGCGACGGAACGCATTCGACAAAAGTC
ACTTCATGCAAGGCTAATCAGTATTTCAGTACCAGCTTAAAGGTTTGTAC
CGCCACAAAGCCGGATGGATGCGTGGAGACGACAACCACTATAGCCACCA
CTACCCCAACCACCACCACCGTGACCACAACAGCGGCGAGTACCACCACA
GCGGAACCCTGGAGTGCGGAGAAAACCTGCCTGACTGTCTCTAAGACCAC
TTTGTTTCAAAACCAAGACGACCCCACCTGCACCACGTACCTATATTGTT
ATTTTATCAATGGATCGGCAACAGCTTTGATAAAGAACTGTAAGACCAAC
CAATATTTTGATGCTTCCTTGAAATCGTGCAGCGAAACAAACCGGATTAT
TGCACCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCTGTCATGACTAGTGCTTGGATTCTCACCATAAAAAACGCCCGGCGG
CACGGAGCGTTCTGAACAATCAGATGGAGTTCTTGACGTCATTACTGGAT
CTATCACAGAGTCAGGCGAGCCTCGATATCAAATAACGCCCGCCTGCCAC
TCATCGCAGTACTTGTGAATTCATTAGCATTCTGCCGAACTGAGGCCATC
ACAAACGGC
UFO11077.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42494-RC | 1205 | CG42494-RC | 277..1125 | 9..856 | 4220 | 99.9 | Plus |
| CG42494-RB | 1337 | CG42494-RB | 409..1257 | 9..856 | 4220 | 99.9 | Plus |
| CG42494-RA | 937 | CG42494-RA | 9..857 | 9..856 | 4220 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3185633..3185952 | 132..451 | 1600 | 100 | Plus |
| 3L | 28110227 | 3L | 3186012..3186299 | 452..739 | 1440 | 100 | Plus |
| 3L | 28110227 | 3L | 3186349..3186469 | 737..856 | 555 | 99.2 | Plus |
| 3L | 28110227 | 3L | 3185480..3185578 | 35..133 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:08:25 has no hits.
UFO11077.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:20 Download gff for
UFO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RB | 409..1261 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:11 Download gff for
UFO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RA | 9..861 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:00 Download gff for
UFO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42494-RA | 9..861 | 9..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:00 Download gff for
UFO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3185396..3185422 | 9..35 | 100 | -> | Plus |
| 3L | 3185481..3185577 | 36..132 | 100 | -> | Plus |
| 3L | 3185634..3185952 | 133..451 | 100 | -> | Plus |
| 3L | 3186012..3186296 | 452..736 | 100 | -> | Plus |
| 3L | 3186349..3186473 | 737..861 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:11 Download gff for
UFO11077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3186012..3186296 | 452..736 | 100 | -> | Plus |
| arm_3L | 3186349..3186473 | 737..861 | 97 | == | Plus |
| arm_3L | 3185396..3185422 | 9..35 | 100 | -> | Plus |
| arm_3L | 3185481..3185577 | 36..132 | 100 | -> | Plus |
| arm_3L | 3185634..3185952 | 133..451 | 100 | -> | Plus |
