UFO11078.5prime Sequence
1129 bp (1011 high quality bases) assembled on 2012-02-08
> UFO11078.5prime
CAGTCGACATCCTTCCCCGTGCAGCCAGGAGGAGTTGTGACCGTTGACAA
CACCTGGGTGCACTCGTCTCCATACAGCCCCCTGCCCCCATACGCGGTTA
TCGGTGGCCATGACTCGGACCGCACGCCCATCTATGTGGGTCGATCCTTT
CACGAAGGCGAGAATCTTCCCGCCAAGGTCGTACCGAGCAAGGGATGCGC
CTATGTGGCCTACGGTGGTGCGGAGCACACGAAGACGCACTACGAGGTGC
TGGTGGGTCAGGGATTTGCCTGGGTGCCCAGTTCCAGCGGTGGAGTGCCA
CCGAATGCGGTGAGGAGCGGAACGACGCGAACGGGCGAGCCGCTCTATGT
GGGACGCGGACATCATGCCGGAAGCTTGACTGTGGGCAAAGTTCATCCAT
CGCACGGCTGCCTATACATTCCATTTGGCGGCCAGGAGGTGCGCATCAAC
ACCTACGAGGTGCTCATCAAGCAGCAGCACGACGTCTGGGTACCGGCCTC
GCCCAGTTACACTCCTCCGGGCGCAGTGATCGCCGGACACGACTCCGACC
GTACTCCCATTTACGCCGGAAGGGCAATGCACGAGGGTGAAATGCTGCCT
GCCAAGGTGGTGCCGAGCAAGGGAACCGCCTACGTTTGCTTCGGCGGATA
CGAATTCCAGAAGCCCAGCTACGAGGTGCTCACTGGCTACGGATATGTAT
GGATGAATTGCGGCCACAGCATTCCACCAAACGCCGTAACCACGGGTCGT
GCTCGCAATGGAGAGCTGCTGTACTATGGGCGAGGACACTACCAGGGCAG
TTTGACACCGGGTCTGATCTCGGCCAGCCAGCGTTGCCTCTATATTCCGT
ACGGAGGTCGGGAGATTCGCATCAACTCGTACGAGATTCTCTGCAGACAA
GCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGGTGGTCAT
AATCATAATCATATCATAATCATATCACAACTAGCCTAGGAGATCCTGTC
ATGACTAGTGCTTGAGTCTCACATAAAAAACGCCCGGCGCACCGGAGCGT
TCCTGAACAATCAGATGAGTCTGAGGTTCATTACTGGAATCTATCACAGG
GTTCAAAGGCGGAGTCGATATTCAAATTA
UFO11078.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-RC | 1100 | CG44250-RC | 125..1008 | 17..900 | 4420 | 100 | Plus |
| CG44250-RB | 1067 | CG44250-RB | 121..975 | 46..900 | 4275 | 100 | Plus |
| CG32633-RB | 956 | CG32633-RB | 794..864 | 373..443 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12950496..12951350 | 900..46 | 4275 | 100 | Minus |
| X | 23542271 | X | 13562712..13562782 | 373..443 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:08:29 has no hits.
UFO11078.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:21 Download gff for
UFO11078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RC | 118..1007 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:13 Download gff for
UFO11078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RC | 125..1014 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:02 Download gff for
UFO11078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RC | 125..1014 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:02 Download gff for
UFO11078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12950490..12951349 | 47..906 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:13 Download gff for
UFO11078.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8837995..8838854 | 47..906 | 99 | <- | Minus |
