UFO11080.5prime Sequence
1138 bp (1002 high quality bases) assembled on 2012-02-08
> UFO11080.5prime
CAGTCGACATGTTAGCGCTTTGCTGGCTTTGTGGCCTGGCCCTTAGTTGT
TGGATGGTTGGCATTCGTGGTGAGGTGGCTCTAAATCAGGAGGATTACAA
CAAAACCTGGATCTACATGCCCAATGGACAGGGTAAGCCTGAGGTGGCCT
ATCTGGTGGAACCTCCGCCCGAAAACCGCATCAATCTGCCACAGCTCATC
AAGTTCGAGCTGTACGGAAGCGACTCCAGTTCCAGTGCTGATTTCTGGAT
AGATGAGAATAACTTTGAGTTTCCGCAGCGCCACAAGCGAGACACCTGGC
AGGAGATGGCGGAGAAATTCAATCCGGAACTGGACACCAAGATACTCGTT
CACGGCTGGAAGTCCAGCACCATGAGCAATTCGATTCAATCGATTCGTGG
TGCCTATATCGAACGTGGCCAGGTGAACGTGTTCGCCATCAACTGGAAGG
ATCAGGCGGATAATATATACTATCTAACACCGGCGCGATATACGGTTCAG
GTGGGACGGGCGGTGGCCAAGCTAATTGATCTGCTGGTGGAGGAGAAGGA
TGCGGATCCGAATAGGATCCATCTGATTGGCCACAGTCTGGGCGCGCACA
TCATGGGCTATGCTGGTTCGTACACTAAGTACAGGGTAAACCGCATCACT
GGCTTGGATCCAGCTCGTCCCGCTTTCGAGGATTGCATTGGTCCGGAGAA
TCACTTGGACGACACGGACGCCAACTTTGTGGATGTCATACACAGCTGTG
CCGGATACCTGGGCTTTCGCAAACCCATCGGCATGGTGGATTTCTATCCC
AATGGCGGTGGACCACCGCAACCAGGCTGCAAGGAGCTGTCGCAGATTTT
CACTGGTTGCAGTCATGGACGTTCATATGAATATTACGCGAGTCTATTAA
CTCGCCAAAGGATTTTACGGTGTTCCCTGCTCTGGACTGGATGACTCAAG
GAAAAATTGCACGGCGGCAGATCCTATGGGTGATCCAGTTCTCGAGAAGC
TCGCGATTTTTCTTTTGTGAAGACGCAACAACGAGCTACGCTTGGTATCG
ATGATTTATGGAGTATGCAGCTTCTAGAACATCCGTGGCGCGCGGTCCAA
GTATGCTATCTATCTAATTAATCTATCACTAGCTAGAG
UFO11080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7367-RD | 1454 | CG7367-RD | 283..1354 | 9..1065 | 4940 | 98.2 | Plus |
| CG7367-RB | 1493 | CG7367-RB | 322..1393 | 9..1065 | 4940 | 98.2 | Plus |
| CG7367-RC | 1265 | CG7367-RC | 143..1165 | 58..1065 | 4695 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8027308..8027941 | 852..219 | 3170 | 100 | Minus |
| 2L | 23513712 | 2L | 8028014..8028177 | 220..57 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 8027014..8027241 | 1065..853 | 425 | 90.4 | Minus |
| 2L | 23513712 | 2L | 8028643..8028691 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:08:35 has no hits.
UFO11080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:22 Download gff for
UFO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 317..1400 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:17 Download gff for
UFO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 317..1400 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:05 Download gff for
UFO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 317..1400 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:05 Download gff for
UFO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8027308..8027939 | 221..852 | 100 | <- | Minus |
| 2L | 8028014..8028176 | 58..220 | 100 | <- | Minus |
| 2L | 8028643..8028696 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:17 Download gff for
UFO11080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8027308..8027939 | 221..852 | 100 | <- | Minus |
| arm_2L | 8028014..8028176 | 58..220 | 100 | <- | Minus |
| arm_2L | 8028643..8028696 | 1..57 | 92 | | Minus |
