Clone UFO11081 Report

Search the DGRC for UFO11081

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:110
Well:81
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG7166-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO11081.5prime Sequence

1154 bp (1041 high quality bases) assembled on 2012-02-08

> UFO11081.5prime
CAGTCGACATGACTACCTATACAAGGAAATACTGGACACTTGTACTCTAC
CTCTTTTCTTTTTCACTTTCCTTGATCGGCGGCTCCTTCATATTGCCAGA
GAATGACCCTCCCACAACGGCGCCAAAGTTCTTATCCAGAGGTCACTTGT
ACAAGGTCATCGTGGGGGAGACCATCGAGCTGCCCTGCAAAGTACAGAAC
CTCGGCTCCTTTGTGCTCCTGTGGCGAAAGGGCTCATCCGTGCTCACAGC
CGGACATTTGAAAATAACAAGGGATCAGCGCTTTAAGATAGTGGGCGACT
ATAACTTGCAGATCAATGGAGTAAAGACTCAAGACGCTGGAGATTATATA
TGCCAGCTGGGAGATCAGGAGAACCGTGACCAAGTTCACACGGTGGAAAT
CTTGGTTCCGCCCACCCTGAGGGCTCTGCCTCATAACGGCCAAGTGACTG
CCCGGAAGGGAAGCACCGTCACCCTGGAATGCAAGGCGTCTGGTAACCCG
GTGCCCACCATATTTTGGTTCAAGAAGGATGTGTTTTCCGGGCCAACACA
CCTGTCGGATAGCTCTACACTCATATTGGAAAACGTGGACAGGCACCACG
CAGGCACATATCAATGCTCAGCCGACAACGGGGTTAAAGATCGCGTATCC
ATGGACATTCAGTTGACCATTCTCTCGCCCCCCGAAATAACGGTAGAGAA
ATCTTGGGTCCACGCATCTGAGGGATACGATGTGGAGCTCGTTTGCATAG
TTCATGGAGATGTAAACTCAGAAATGCTGTGGTACCAGAACTCATTTCTA
CTTGATGCTACCGATCGGAGATCTATGTATCCACGAGATGATAGGTACAG
CCTGATTATCCCGGAACTTCCAGCCAACGGATTTCGGAAATTATAGCTGT
GTTGCGGATATGCTTGGGGAAAACAAAAAAGTATATTGAAGTGTCTGGAC
GACCTGTCCTGCTGACTTCATATCTCCGCGTGGTGATTCCTAGATCACTA
CACTTGACGTGACAATTGAGTCAATACGCGCTTGATGAGAATAAGCTGTT
GTATCGCCGTTGTTGATGATGAACTTACAGCCACCTGCCATGGCACGAGT
ATCATATCAAGCCAAGCAATCGAACTGAATGATTCACTTCTAGGTCGAAT
CCTC

UFO11081.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7166-RC 2073 CG7166-RC 175..1313 9..1128 5095 97.6 Plus
CG7166-RB 3466 CG7166-RB 175..1313 9..1128 5095 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21623222..21623549 405..78 1640 100 Minus
3L 28110227 3L 21622891..21623161 675..405 1355 100 Minus
3L 28110227 3L 21622351..21622648 1061..774 925 94.3 Minus
3L 28110227 3L 21622725..21622822 773..676 490 100 Minus
3L 28110227 3L 21623690..21623758 79..11 345 100 Minus
Blast to na_te.dros performed 2014-11-27 21:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 2863..2896 900..933 116 82.4 Plus

UFO11081.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:23 Download gff for UFO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7166-RB 175..1315 9..1131 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:20 Download gff for UFO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7166-RB 175..1315 9..1131 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:06 Download gff for UFO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7166-RB 175..1315 9..1131 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:06 Download gff for UFO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21622891..21623160 406..675 100 <- Minus
3L 21622346..21622648 774..1065 95 <- Minus
3L 21622725..21622822 676..773 100 <- Minus
3L 21623222..21623548 79..405 100 <- Minus
3L 21623691..21623765 1..78 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:20 Download gff for UFO11081.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21616791..21616865 1..78 94   Minus
arm_3L 21615446..21615748 774..1065 95 <- Minus
arm_3L 21615825..21615922 676..773 100 <- Minus
arm_3L 21615991..21616260 406..675 100 <- Minus
arm_3L 21616322..21616648 79..405 100 <- Minus