UFO11081.5prime Sequence
1154 bp (1041 high quality bases) assembled on 2012-02-08
> UFO11081.5prime
CAGTCGACATGACTACCTATACAAGGAAATACTGGACACTTGTACTCTAC
CTCTTTTCTTTTTCACTTTCCTTGATCGGCGGCTCCTTCATATTGCCAGA
GAATGACCCTCCCACAACGGCGCCAAAGTTCTTATCCAGAGGTCACTTGT
ACAAGGTCATCGTGGGGGAGACCATCGAGCTGCCCTGCAAAGTACAGAAC
CTCGGCTCCTTTGTGCTCCTGTGGCGAAAGGGCTCATCCGTGCTCACAGC
CGGACATTTGAAAATAACAAGGGATCAGCGCTTTAAGATAGTGGGCGACT
ATAACTTGCAGATCAATGGAGTAAAGACTCAAGACGCTGGAGATTATATA
TGCCAGCTGGGAGATCAGGAGAACCGTGACCAAGTTCACACGGTGGAAAT
CTTGGTTCCGCCCACCCTGAGGGCTCTGCCTCATAACGGCCAAGTGACTG
CCCGGAAGGGAAGCACCGTCACCCTGGAATGCAAGGCGTCTGGTAACCCG
GTGCCCACCATATTTTGGTTCAAGAAGGATGTGTTTTCCGGGCCAACACA
CCTGTCGGATAGCTCTACACTCATATTGGAAAACGTGGACAGGCACCACG
CAGGCACATATCAATGCTCAGCCGACAACGGGGTTAAAGATCGCGTATCC
ATGGACATTCAGTTGACCATTCTCTCGCCCCCCGAAATAACGGTAGAGAA
ATCTTGGGTCCACGCATCTGAGGGATACGATGTGGAGCTCGTTTGCATAG
TTCATGGAGATGTAAACTCAGAAATGCTGTGGTACCAGAACTCATTTCTA
CTTGATGCTACCGATCGGAGATCTATGTATCCACGAGATGATAGGTACAG
CCTGATTATCCCGGAACTTCCAGCCAACGGATTTCGGAAATTATAGCTGT
GTTGCGGATATGCTTGGGGAAAACAAAAAAGTATATTGAAGTGTCTGGAC
GACCTGTCCTGCTGACTTCATATCTCCGCGTGGTGATTCCTAGATCACTA
CACTTGACGTGACAATTGAGTCAATACGCGCTTGATGAGAATAAGCTGTT
GTATCGCCGTTGTTGATGATGAACTTACAGCCACCTGCCATGGCACGAGT
ATCATATCAAGCCAAGCAATCGAACTGAATGATTCACTTCTAGGTCGAAT
CCTC
UFO11081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7166-RC | 2073 | CG7166-RC | 175..1313 | 9..1128 | 5095 | 97.6 | Plus |
CG7166-RB | 3466 | CG7166-RB | 175..1313 | 9..1128 | 5095 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21623222..21623549 | 405..78 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 21622891..21623161 | 675..405 | 1355 | 100 | Minus |
3L | 28110227 | 3L | 21622351..21622648 | 1061..774 | 925 | 94.3 | Minus |
3L | 28110227 | 3L | 21622725..21622822 | 773..676 | 490 | 100 | Minus |
3L | 28110227 | 3L | 21623690..21623758 | 79..11 | 345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 21:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 2863..2896 | 900..933 | 116 | 82.4 | Plus |
UFO11081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:23 Download gff for
UFO11081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7166-RB | 175..1315 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:20 Download gff for
UFO11081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7166-RB | 175..1315 | 9..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:06 Download gff for
UFO11081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7166-RB | 175..1315 | 9..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:06 Download gff for
UFO11081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21622891..21623160 | 406..675 | 100 | <- | Minus |
3L | 21622346..21622648 | 774..1065 | 95 | <- | Minus |
3L | 21622725..21622822 | 676..773 | 100 | <- | Minus |
3L | 21623222..21623548 | 79..405 | 100 | <- | Minus |
3L | 21623691..21623765 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:20 Download gff for
UFO11081.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21616791..21616865 | 1..78 | 94 | | Minus |
arm_3L | 21615446..21615748 | 774..1065 | 95 | <- | Minus |
arm_3L | 21615825..21615922 | 676..773 | 100 | <- | Minus |
arm_3L | 21615991..21616260 | 406..675 | 100 | <- | Minus |
arm_3L | 21616322..21616648 | 79..405 | 100 | <- | Minus |