UFO11082.5prime Sequence
1107 bp (1001 high quality bases) assembled on 2012-02-08
> UFO11082.5prime
CAGTCGACATGTCCGACGCCTTCGACGAGTCCTCGGAACTGGAACAGGAT
CCGCCGCCCTTCGGATCCGAGGCTAGCACTTCGAAGGCCAAGGCCGAACT
GGTGGCCATTGCGACTGCCTCTGCGGATCAGCAGGATATCGTCGAGGGCG
AGAAGGAGGGCGAGGAGCGAGAGAGTTGGGACAGCAAGATTATGTTCTTG
CTGGCCACCATCGGCTATGCCGTTGGCCTGGGAAATGTGTGGCGTTTTCC
CTATTTGGCGCAGAAGAATGGCGGCGGTGCCTTCCTGGTGCCCTACTTCA
TAATGCTGTGCATCCAGGGCATACCGATCTTCTATCTGGAACTGGCAATT
GGCCAGCGACTGCGAAAAGGAGCCATCGGCGTTTGGAGCCAAGTATCGCC
GTATCTAGGCGGCATTGGTATCTCATCGGCGGTGGTCAGCTATATAGTGG
CGTTGTACTATAACACTATCATTGCCTGGTGCCTGATCTATCTGCTACAC
AGTTTCGAATCGCCATTACCCTGGGCGGACTGTCCGACGAGGTTGTATAA
GAATTTTACCTACGACCACGAACCGGAGTGTGTGGCCTCATCTCCGACGC
AGTTCTATTGGTATCGCACCACATTGCAGTGCTCGGAGAGTGTGGATATG
CCGGAGAACTTCAATTACCACATGGCCATTGCGCTAATTGTCTCCTGGTT
TTTGGTCTACATCTGCATGGTCCAGGGCATCACGTCATCCGGCAAGATCG
TCTATATGACGGCCATATTCCCCTATGTGGTGCTTATAATATTTTTTTTT
CGGGGCATCACCTTGAAGGGTGCTGCAGATGGGGGTGGCACACTTGTTTA
CCCCACGATGGGAAACTCTATTGGATCCAGTCGGTTTGGCTGGGAGGCCG
GGCACACAGATCTTCTTCTCGCTGGGAATGGCCTTTGGCGGTCTGAATAG
CCTTCAGTTCGTACAATCCGGCGATAATAATTGCTACAGGGACGCCATAC
TCGTTACGGCTCACAAATGTGACACATCATGTTTGCCGGGATTGGTGTTT
TCTTTGTCAATGGATTTAGGCACGGCCACTTGGATCGCTTGCATTGAGAA
CGTATTG
UFO11082.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-RD | 4353 | CG10804-RD | 476..1565 | 8..1098 | 4920 | 97.4 | Plus |
| CG10804-RC | 4536 | CG10804-RC | 885..1974 | 8..1098 | 4920 | 97.4 | Plus |
| CG10804-RB | 4127 | CG10804-RB | 476..1565 | 8..1098 | 4920 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3479499..3480350 | 1068..214 | 3650 | 97 | Minus |
| X | 23542271 | X | 3480417..3480628 | 219..8 | 1045 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:08:02 has no hits.
UFO11082.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:15 Download gff for
UFO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RC | 184..1240 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:57 Download gff for
UFO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RA | 468..1524 | 1..1059 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:48 Download gff for
UFO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RB | 468..1524 | 1..1059 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:48 Download gff for
UFO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3480422..3480636 | 1..214 | 98 | | Minus |
| X | 3479521..3480349 | 215..1047 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:57 Download gff for
UFO11082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3373554..3374382 | 215..1047 | 98 | <- | Minus |
| arm_X | 3374455..3374669 | 1..214 | 98 | | Minus |
