UFO11083.5prime Sequence
1100 bp (1016 high quality bases) assembled on 2012-02-08
> UFO11083.5prime
CAGTCGACATGATGCTTTTCATGCTGCTGTTTAGTCGGCAGGGCAAACTG
CGGTTACAAAAGTGGTACATGGCCTATCCGGATAAGGTGAAAAAGAAGAT
CACCCGGGAACTGGTCACTACGATACTGGCCCGCAAGCCCAAAATGTGCT
CCTTTCTGGAGTGGAAGGACTGCAAAATTGTCTACAAAAGGTATGCCAGC
TTGTATTTCTGTTGCGCCATCGAGCAGAACGACAACGAACTGCTGACACT
GGAGATCATTCATCGCTATGTGGAGCTGTTGGATAAGTACTTCGGCAGCG
TCTGCGAGCTGGACATTATCTTTAACTTTGAAAAAGCATACTTTATCCTG
GATGAGCTGCTCATTGGCGGCGAAATCCAGGAGACGTCCAAAAAGAACGT
ACTTAAGGCGATTGCCTCGCAGGATCTGCTCCAAGAGGACGAAGCCGTTG
AGGGCACTTTAAGAGACATTGGACTCCTCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTT
GCCCATGGTGAAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAA
ATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTT
CTCAATAAACCCTTTAGGAAATAGGCCAGTTTTCACGTACACGCCACATC
TTGCGAATATATGTGTTAGAACTGCGGAAATCGTCGTGTATCACCTCCAG
AGCGATGAAACGTTTCAGTTGCCTCATGGAACCGGTTACAAGGGGTGACA
UFO11083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AP-1sigma-RC | 795 | CG5864-RC | 146..616 | 9..479 | 2355 | 100 | Plus |
AP-1sigma-RB | 1181 | CG5864-RB | 146..616 | 9..479 | 2355 | 100 | Plus |
AP-1sigma-RA | 1079 | CG5864-RA | 146..576 | 9..439 | 2155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23959031..23959212 | 11..192 | 910 | 100 | Plus |
3R | 32079331 | 3R | 23959456..23959594 | 300..438 | 695 | 100 | Plus |
3R | 32079331 | 3R | 23959278..23959390 | 189..301 | 565 | 100 | Plus |
3R | 32079331 | 3R | 23960896..23960939 | 436..479 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:08:05 has no hits.
UFO11083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:15 Download gff for
UFO11083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RB | 143..618 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:12:58 Download gff for
UFO11083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RB | 146..621 | 9..484 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:50 Download gff for
UFO11083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AP-1sigma-RB | 146..621 | 9..484 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:50 Download gff for
UFO11083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23959024..23959210 | 1..190 | 97 | -> | Plus |
3R | 23959280..23959388 | 191..299 | 100 | -> | Plus |
3R | 23959456..23959593 | 300..437 | 100 | -> | Plus |
3R | 23960898..23960939 | 438..479 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:12:58 Download gff for
UFO11083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19784746..19784932 | 1..190 | 97 | -> | Plus |
arm_3R | 19785002..19785110 | 191..299 | 100 | -> | Plus |
arm_3R | 19785178..19785315 | 300..437 | 100 | -> | Plus |
arm_3R | 19786620..19786661 | 438..479 | 100 | == | Plus |