UFO11084.5prime Sequence
1050 bp (1042 high quality bases) assembled on 2012-02-08
> UFO11084.5prime
CAGTCGACATGGCGCACTTGGTGGTTAGGGTGATTGAGCGTTGTGAGAAT
GCCAACGAAAGTGCTCATTTAGATCTTTCAAGTTGTGAACTGATGCAAAT
ACCAGATGCGGTATATCATCTTATGCGAAACACAGAGTTGATCACCTGCA
ATCTCAGTGGCAATGTGCTCAAAAGCGTTTCGCCCAAGTTTTCGCAAAAG
TTTAGTACCATCACAGATCTTAATCTGTCACACAACAAACTGTCGAGGCT
GCCAGAAGAATTCGCCAGCTTGTCTGCGCTAACCAAGCTGAATATCTCGA
ACAATTCATTTATCGTTTTGCCACAAGTAGTCTTTAAGCTTCAGAGTCTT
GCCAGTCTGGATGCCCAGAACAATGCCATTTTGGAAATTGATACCGATGA
GGCAATTACCAGTGACAATTTGGCCCTCGTTGATCTTCGGAATAATCCGC
TGAGCAGAAACTGCCGACGAAAGCTGCAGAGCTTCAAGACCCCCTTCCAC
CTTGAGATCTCCAAGGATGTTGAAGACGACTGGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGCGAAGAAGTTGTCCATATTGCCACGT
TTAAATCAAAACTGTTGAACTCACCCAGGGATTGGCTGAGACGAAAACAT
ATTTCTCAATAACCCTTTAGGGAAATAGGCCAGGGTTTCACCGTTACCGG
UFO11084.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sclp-RB | 770 | CG2471-RB | 110..634 | 9..533 | 2610 | 99.8 | Plus |
| Sclp-RC | 1766 | CG74-RC | 505..966 | 72..533 | 2295 | 99.8 | Plus |
| Sclp-RA | 1102 | CG2471-RA | 505..966 | 72..533 | 2295 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11921998..11922168 | 384..214 | 855 | 100 | Minus |
| X | 23542271 | X | 11921783..11921932 | 533..384 | 735 | 99.3 | Minus |
| X | 23542271 | X | 11922230..11922375 | 216..71 | 730 | 100 | Minus |
| X | 23542271 | X | 11922588..11922651 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:08:08 has no hits.
UFO11084.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:16 Download gff for
UFO11084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RB | 103..637 | 1..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:01 Download gff for
UFO11084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RB | 103..637 | 1..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:39:52 Download gff for
UFO11084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sclp-RB | 103..637 | 1..537 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:39:52 Download gff for
UFO11084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11921779..11921931 | 385..537 | 98 | <- | Minus |
| X | 11921998..11922165 | 217..384 | 100 | <- | Minus |
| X | 11922230..11922373 | 73..216 | 100 | <- | Minus |
| X | 11922588..11922658 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:01 Download gff for
UFO11084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11815812..11815964 | 385..537 | 98 | <- | Minus |
| arm_X | 11816031..11816198 | 217..384 | 100 | <- | Minus |
| arm_X | 11816263..11816406 | 73..216 | 100 | <- | Minus |
| arm_X | 11816621..11816691 | 1..72 | 94 | | Minus |
