UFO11088.5prime Sequence
1159 bp (1038 high quality bases) assembled on 2012-02-08
> UFO11088.5prime
CAGTCGACATGAAGGCAGTTACTTCAAGAGTGTTGGGTTCGATCCTAGTG
TTATTATTGATACATTTAACATCAGCAAAAGAAGCGGAGGTTCACTTAAC
AAATCCTCCAACAGAATGCAGACTGGTGTGTAATCCAGGGTATCATATCG
TGGTTAAAAAGGGTACCTTGTATCATAATGGTAGGAAGCTTGACGATAAT
GCACGGTATGCGCCGAAGATGGCGTGTGATTTGGAGAACAGTTGCAACTT
TAAATTTACGCCACAAACATTAAGTTACATGAATACAGCAATTAATGTAG
GCACACAACTAACTATTAATTACGACTGCAAGCGGGATAACTTCCAAGGA
GATCCGAGAAGGATAACAGATTATACGAAAACGCAAGGATGTCCGCAAGA
CTCTTTTGTTCAGAAACACGTCGCATATTTTAACGATGAAAATATTGCTC
CCAAGAGGGATACACCTGTCGCGCAAAGGGAAAGGGAAATGATTGCCATG
GGCGTATGTGCTCAGGTCAAACGTTTTAGGCAAAACAACCCAAGAACGCC
CATCGATCCACATCTTGGCACAGTGTACTTGATATTTGACAATAGAACAA
GTAAAAATGATTTCATGCCGAGTCCTGATGTTAGAAAGTGCCAACTTAAG
CCCAATTCTCTGACCAAGACATACAAGTATGATTGCGAGAGGAAAGCGGA
TAAATGGACATGTACTTTTGCCAGCAAGGGAAGGGACTTGGCCATAAATG
ACAAGATTACAAGTCACTTAGGAGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTTTCAC
CAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAGGGGAGCTCGATA
TTCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTATTCATT
AAGCATTCTGCCGACTGGAGGCATCACAAACGGCATGATGACTTGAATCG
CAGCGGCATCAGAACTTTGTCGCTGTGCTATATATTTGCATGGGTGAACG
GGGGGCGAA
UFO11088.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43085-RB | 1193 | CG43085-RB | 298..1062 | 9..773 | 3825 | 100 | Plus |
| CG43085-RA | 925 | CG43085-RA | 30..794 | 9..773 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17645617..17646321 | 773..69 | 3525 | 100 | Minus |
| 3L | 28110227 | 3L | 17646381..17646440 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:08:49 has no hits.
UFO11088.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:25 Download gff for
UFO11088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43085-RA | 23..797 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:27 Download gff for
UFO11088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43085-RA | 23..794 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:11 Download gff for
UFO11088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43085-RA | 23..794 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:11 Download gff for
UFO11088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17645617..17646321 | 69..773 | 100 | <- | Minus |
| 3L | 17646381..17646447 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:27 Download gff for
UFO11088.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17638717..17639421 | 69..773 | 100 | <- | Minus |
| arm_3L | 17639481..17639547 | 1..68 | 94 | | Minus |
