UFO11089.5prime Sequence
1129 bp (998 high quality bases) assembled on 2012-02-08
> UFO11089.5prime
CAGTCGACATGATGCACAGCGCGAAGAACGTGTGCCGGACTTGTATGGAC
GAGACCGGCACCCTGGTAGATATATTCGCCAATGTAAGGGATCCTGTGCT
CGACGAACCGGAGATGAGCCTCTCGCACATCCTGGCCAGGTGTACCGAAC
GTCCAGTGAAACGCGGCGACCTGCTGCCGCAGTTCATATGCGTTTCCTGC
GTCCTGGCCGTGCAGAATGCTTTCCGGTTCAAGTGGCAAAGCGAGCAGAG
CTACCAGCACTTCTTCCGCGTCCTAAACCAGTCGGGTGCTCCGGAAAACC
AAGTGCACTTAGCTGCATGTAATGGGGATAAGAACCAGATAATAAACCAG
AAAATGCAGCTCAAAAGCGATCGTCAACAGGATACGCAGCAAATGACAAA
AACGCAGAAACCAGATGATGATCTTAGTCAAAAACAAACACTCCAAGCGA
AGCTCCAAGAGGGAAATATTGATGGCCCACCGGAGTCCTTCACCCTGCAT
CCTCGTAAGCGGACTTGTCGCACAGAAGAACAGGCAGACATGATCCCAAA
GGAAGCTACAAGAAGTACCAAAATGATCTGCGATGCCGATGGCTACTACA
ACTGCCCGCACTGTTCTAAGCGATTTTGTTCCCAGACCCAGTTAAGGACC
CACATCACCGATCTGTGCAACAGGTGTCCCTACTGCCCACGCACTTATAT
GCAAAAATCGAACCTCAAGCGGCATTTGCGAAACCACCTAAGCAAGCCAG
CGCACAAGTGTTTCCACTGCTCGAAAGGCTTTCATGCGTAAAGATCACCT
TAAAAGGCACCTGCGCACCCACGACAGTGACGGTCCGCTCTCCTGCAGCC
AGTGCTCAGCGGTATTTATCGAACACGTTCAGCTGGAAATCCATCGCAGA
GAGCACAACAAAGCCGGGCTCTTCAAATCGGAGTCCACGAACGATCCTGA
CTCGGACGACAGCGATCAAGCGCAGATCTAAACAAAGTGACTAGACACCT
TCAATGGCACGTGCAGCATTCCACCTATGCTAAAGCGCAGCTTCTAGAAC
ATCGTTTGGCGCGCGGGCCCAGGTATGGTCTAATCTAATCAAATCATAAT
CTATCCACTAGCCTAGAGTCCTGCTATGA
UFO11089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2678-RB | 2003 | CG2678-RB | 234..1269 | 9..1036 | 4930 | 98.9 | Plus |
| CG2678-RA | 1811 | CG2678-RA | 234..1269 | 9..1036 | 4930 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7914084..7914637 | 9..562 | 2770 | 100 | Plus |
| 3R | 32079331 | 3R | 7914790..7915273 | 561..1036 | 1970 | 97.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:08:53 has no hits.
UFO11089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:26 Download gff for
UFO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RB | 228..1263 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:30 Download gff for
UFO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RA | 234..1269 | 9..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:13 Download gff for
UFO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2678-RA | 234..1269 | 9..1036 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:13 Download gff for
UFO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7914084..7914637 | 9..562 | 100 | -> | Plus |
| 3R | 7914792..7915273 | 563..1036 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:30 Download gff for
UFO11089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3739806..3740359 | 9..562 | 100 | -> | Plus |
| arm_3R | 3740514..3740995 | 563..1036 | 97 | == | Plus |
