UFO11093.5prime Sequence
1106 bp (816 high quality bases) assembled on 2012-02-08
> UFO11093.5prime
CAGTCGACATTTCTCCTAAGTTCGCACTTGCAGTTCTGCTCCTCAGCTGC
GTTCTCCTAGGACTGGCCAATGCCCTCTATAACAGGCGCTATCAGACTGG
GCCTAACCGACAAAAAATTGGGACTCGAATGAATGCGGACGGCCCTTTGC
CGCCAAATTTCCCCCCTCCGGCTGATAATGCTGGTGGCAGTGATGTCCCG
GCCAACGTGGATTGCATGCCCAATCTATTGGCTAGTAACACCCTTGATAC
CAGGAAACCTAGGCCCAAGCATGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGA
ATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCAT
GGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCTACGTTTAAATCAA
AACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCA
ATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATC
TTGCGAATATATGTGTAGAAACTGTCCGGAAATCGTCGTGGTATCCACTC
CAGGAGCGATGAAAACGTTCAGTTCGCTCATGGAAAACGGTGTACCAGGG
TGAACACTATCCCATATCACAGCTCACGTCTTTCATTGCCATACGAAATT
CCGGATGAGCATTCATCAGGCGGGTAGAATGTGAATAAAGGCCGGATAAC
AACTTGGGCTAATTTTTCTTTACGTCTTGAAAAGGCCGGATAATCCAGCT
GAACCGGTCTGTTTAGTTCACTGGAGCAACTGACTGAAATGCCCTCAAAG
TTCTTA
UFO11093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42792-RA | 397 | CG42792-RA | 10..270 | 12..272 | 1275 | 99.2 | Plus |
| CG42792-RB | 468 | CG42792-RB | 42..302 | 12..272 | 1275 | 99.2 | Plus |
| CG44475-RA | 343 | CG44475-RA | 21..260 | 12..272 | 740 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15865095..15865250 | 272..117 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 15865316..15865420 | 116..12 | 495 | 98.1 | Minus |
| 2L | 23513712 | 2L | 15882866..15882974 | 272..164 | 440 | 93.6 | Minus |
| 2L | 23513712 | 2L | 15883066..15883170 | 116..12 | 390 | 91.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:09:02 has no hits.
UFO11093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:28 Download gff for
UFO11093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42792-RA | 1..267 | 9..276 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:35 Download gff for
UFO11093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42792-RA | 7..273 | 9..276 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:19 Download gff for
UFO11093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42792-RB | 39..305 | 9..276 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:19 Download gff for
UFO11093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15865095..15865250 | 117..272 | 100 | <- | Minus |
| 2L | 15865316..15865423 | 9..116 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:35 Download gff for
UFO11093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15865316..15865423 | 9..116 | 97 | | Minus |
| arm_2L | 15865095..15865250 | 117..272 | 100 | <- | Minus |
