UFO11094.5prime Sequence
1075 bp (823 high quality bases) assembled on 2012-02-08
> UFO11094.5prime
CAGTCGACATGTCTGCGGCCCTCTTACGAAGTGTTAAATTGGTTTATTTA
CGGCCAATACTAGCTAAACCGAATTTCCAGCTCTTACACACCAGCAGCGT
GCTCCGCAAATGGCGGAATGCATCCTCCGGCGAAGTGGAACGGAAGCTCC
TCTTTGGCGACAGGCTACCAGATAACTATAAACTGATTTACCGGGCCCCT
ATCGAGAGCTACGTGACCTGGACGAAGAATATATCCACTGCCACGACCAC
TGTACTTGCTGCGGTGGCCGCCTATCACTATGCCACAACCATAAACTACC
TGGATATGGTCCAGAAAATGGACATAGCCATTCTGGTGTCCCAGGAATCA
GATCTGTACTACTTTGTGGGTGGATTTCTGCTTATAAACCTGGCGATTCG
AGCTTTTGTCGCCAAATATCCACTGAGAATATACAAGAGCTCGGAAAAAT
ACGTGGCTGTCTATGGGTCCCAACTACCCATTGGAACTGTAAAACACTAT
TTTGAACGCGGTCAAATAGCTGAATACAAGAATTTTTTAAATCCCTGGAG
CCACATTATGTACAAACTGGGCAACCGCTCCTCAATGCTTCTGGTTGATT
ACTTCAAGACCCCCTCGGAGTTTCCACCAACTGTTCGCGACCAAACAAGA
AACGGCAAGCTTTCTAGACCCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTGGAGA
TCTTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCCTGAGGTCATTACTG
GATCTTATCAACAGGAGTCCAAGCGAGCTCCATATCAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTGTATTCATTAAGCATTCTGCCGACTGGA
AGCCATCACAAACGGCATGACGAACCTGGAATCGCAGCCGTCTTCAGCTC
TTGTCTGCCTGGCATATATTTTTTGTCCTTGTGAAAACGGGGGGCGAATA
AATTGCCCTAATTGGTCCACGTTTA
UFO11094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33228-RC | 737 | CG33228-RC | 46..690 | 9..654 | 3190 | 99.7 | Plus |
| CG33228-RB | 809 | CG33228-RB | 100..744 | 9..654 | 3190 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24668737..24669096 | 448..89 | 1800 | 100 | Minus |
| 2R | 25286936 | 2R | 24668476..24668680 | 654..449 | 980 | 99.5 | Minus |
| 2R | 25286936 | 2R | 24669152..24669231 | 88..9 | 385 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:08:42 has no hits.
UFO11094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:24 Download gff for
UFO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 94..752 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:22 Download gff for
UFO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 94..752 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:08 Download gff for
UFO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33228-RB | 94..752 | 1..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:08 Download gff for
UFO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24668468..24668680 | 449..663 | 97 | <- | Minus |
| 2R | 24668737..24669096 | 89..448 | 100 | <- | Minus |
| 2R | 24669152..24669237 | 1..88 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:22 Download gff for
UFO11094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20555991..20556203 | 449..663 | 97 | <- | Minus |
| arm_2R | 20556260..20556619 | 89..448 | 100 | <- | Minus |
| arm_2R | 20556675..20556760 | 1..88 | 94 | | Minus |
