UFO11095.5prime Sequence
1086 bp (1053 high quality bases) assembled on 2012-02-08
> UFO11095.5prime
CAGTCGACATGTCTCGTGTGCTTTCGTTAGCTCTGATCGGATTAGTGCTC
TGCCAGGGTTTAGCACAACTGCTGGATAAAAAGTGTCACGATCCAAAAAC
TTCAGAGAATATAAATTTCAATCATGGTGCAACTGAAACCGCACCCTGGA
TGGCAAGCATATACAAGAATAACCAATTTATTTGCGACGGAACGCTTGTT
CACAAATTGTTCGTCCTAACGGCCGCGAGTTGCATATCGAAAGATAGTCA
ACTGTACGTGCTTTTCGGGATGTACAACCAATACAGGGATGCATCACAAT
TCTTTAACAACGAACAATATGGAGTGGCGGTTGCTTTGCAACATTCCAAT
TTCCGCCCAAACAATGGCGTCAACGATATAGGCCTTTTAAGACTTTACGG
TGAAGTGACGCATTATGCCCACATCCGCCCGATTTGTATAATATTAGATC
ATGTGGTAAAGTCAGCACCATTTGAAAGGTTTGAGGGCTTTGGATGGCAA
CAACAAGGAACAGAAGCATCCAGCCAAGTGAGGCAGACCGTATATCTCTC
TCAGAAAAAACCATTTGAGTGCCATCGAAATGGTCAGTTGTTGCCCATTA
ACGAGGGGCAATTCTGCGCCGGCAATAGGGATAGAAGTTTCTGTAGAAGT
AACTCCGGCAGTCCGTTGACAGCTGATTTCACCTACGGCGTAAAAAATAT
CACCGTTCAGGTTGGATTGGTGAGCTACGGCAGCGAGTTGTGCAGCCCAA
CTAGCGTCTATACAGATGTTGTCGCCTTCAAGGACTGGATATATAATACT
GTCAGGAATTTCGAAACTAAAGTGATCAGGTTGTGTACGAAGAATGCAAG
AGCAACTGGGCGGAGGATGTCCTTGTTCGCCTGTGGGAGGTATCTCTGCA
TCAGAAATACTTTCTCTGGCGTGCTTATTACGAATAGATTTGTCTTGACG
GTGCCAGTGCTTTCCCTAACATTTCTTTAGTAATGAAGTGGAAACAAATT
ATCTCAAAGTTTCGACGTGAATCGATCCATACCCATCCCAGAATTCACGC
ATTCATCAATTGAACAACAATAATTTGCATTGCCCT
UFO11095.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33465-RC | 1610 | CG33465-RC | 30..1104 | 9..1083 | 5085 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15819948..15820468 | 937..417 | 2495 | 99.4 | Minus |
| 2R | 25286936 | 2R | 15820887..15821085 | 207..9 | 995 | 100 | Minus |
| 2R | 25286936 | 2R | 15820557..15820720 | 417..254 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 15820769..15820817 | 256..208 | 245 | 100 | Minus |
| 2R | 25286936 | 2R | 15819695..15819768 | 1060..988 | 195 | 93.3 | Minus |
| 2R | 25286936 | 2R | 15819843..15819892 | 985..937 | 185 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:08:46 has no hits.
UFO11095.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-02-08 10:11:25 Download gff for
UFO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 11..1085 | 9..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:25 Download gff for
UFO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 30..1104 | 9..1083 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:09 Download gff for
UFO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33465-RC | 30..1104 | 9..1083 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:09 Download gff for
UFO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15819840..15819892 | 937..987 | 94 | <- | Minus |
| 2R | 15819949..15820467 | 418..936 | 99 | <- | Minus |
| 2R | 15820557..15820720 | 254..417 | 100 | <- | Minus |
| 2R | 15820772..15820817 | 208..253 | 100 | <- | Minus |
| 2R | 15820887..15821085 | 9..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:25 Download gff for
UFO11095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11708062..11708225 | 254..417 | 100 | <- | Minus |
| arm_2R | 11708277..11708322 | 208..253 | 100 | <- | Minus |
| arm_2R | 11708392..11708590 | 9..207 | 100 | | Minus |
| arm_2R | 11707345..11707397 | 937..987 | 94 | <- | Minus |
| arm_2R | 11707454..11707972 | 418..936 | 99 | <- | Minus |
