UFO11101.5prime Sequence
1113 bp (992 high quality bases) assembled on 2012-03-05
> UFO11101.5prime
CAGTCGACATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGCTCCTGTGT
CTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCCTCGACGGC
GACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTCATCCGCCA
CCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCACTGCCTCC
TCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCTCGCCGTCG
TCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACAGCGCCAGG
AAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGCGTCGCCTG
ATCAATCAACTTCAGGGAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCCCCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTCACCGTAACACGCCACATCTTGCG
AATATATGTGTAGAAACTGCGGAAATCGTCGTGTAATCCACTCCAGAGCG
ATGAAACGTTTCAGTTGCTTCATGAAAACGGGTGTTACAAGGGTGAACAC
TATCCATATCACAGCTCACCGTCTTCATGCATACGAATTCGGATGACATT
CATCAGCGGCAAGAATGTGAATAAAGCGGATAAACCTGTGCTATTTTCTT
TACGGCCTAAGCG
UFO11101.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32453-RB | 741 | CG32453-RB | 18..377 | 9..368 | 1800 | 100 | Plus |
| CG32453-RA | 444 | CG32453-RA | 18..377 | 9..368 | 1800 | 100 | Plus |
| CG14454-RB | 445 | CG14454-RB | 17..376 | 9..368 | 1785 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22697247..22697606 | 9..368 | 1800 | 100 | Plus |
| 3L | 28110227 | 3L | 22692153..22692512 | 368..9 | 1785 | 99.7 | Minus |
| 3L | 28110227 | 3L | 22693532..22693735 | 266..63 | 665 | 90.3 | Minus |
| 3L | 28110227 | 3L | 22696024..22696227 | 63..266 | 665 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:09:20 has no hits.
UFO11101.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:35 Download gff for
UFO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32453-RA | 2..368 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:46 Download gff for
UFO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32453-RA | 11..377 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:27 Download gff for
UFO11101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32453-RA | 11..377 | 1..368 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 21:40:27 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 18:13:46 has no hits.
