UFO11103.5prime Sequence
1169 bp (1004 high quality bases) assembled on 2012-03-05
> UFO11103.5prime
CAGTCGACATGGCTGATATGGAGATACAGAGCAACAAAATGTCAATAACG
GAGGAAACACAAGTGCAGACGCGCAAGGAATGTGGAAAAAGGGGACGAAA
ACCAGGAAGAAAGACGTCTACTGAAAAATTGGACATGAAAGCCAAACTAG
AACGCAGCAGACAAAGTGCCAGGGAATGCCGGGCGCGCAAGAAGCTGCGG
TATCAGTACCTGGAGGAACTGGTGGCGGATCGGGAGAAGGCTGTAGTTGC
TTTGCGTACGGAACTGGAGCGCGTCGTTAATTCAATGGAAGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAG
ACGAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCA
CCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGGAATC
GTCGTGGTATTCACTCCAGAGCGATGGAAAACGTTTCAGTTTGCTCATGG
AAACGGTGGTACAAGGGTGAACCATATCCCATATCACCAGCTCACGTCTT
TCATGGCATACGAAATTCGGGATGAGCATTCATCAGGCGGCAAGAATGGT
GATAAGGCCGGATAAACCTGGTGCTATTTTCTTTACGGTCTTTAAAGGCG
TATATCAAGCTGAACCGTCTGGTATAGGACCTTGAGCACTGGACTGAAAT
GCCTCAAGGTTCTTTACGATGCCATTGGGATATATCACGGGGTATATCCA
GTGATTTTTTTCCATAAGC
UFO11103.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18619-RD | 634 | CG18619-RD | 84..365 | 9..290 | 1410 | 100 | Plus |
| CG18619-RC | 516 | CG18619-RC | 84..362 | 9..290 | 1355 | 98.9 | Plus |
| CG18619-RA | 512 | CG18619-RA | 84..361 | 9..290 | 1340 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10264762..10264889 | 149..276 | 640 | 100 | Plus |
| 2L | 23513712 | 2L | 10264548..10264633 | 65..150 | 430 | 100 | Plus |
| 2L | 23513712 | 2L | 10264208..10264264 | 9..65 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:09:23 has no hits.
UFO11103.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:35 Download gff for
UFO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18619-RD | 78..362 | 9..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:48 Download gff for
UFO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18619-RD | 84..368 | 9..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:29 Download gff for
UFO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18619-RD | 84..368 | 9..294 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:29 Download gff for
UFO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10264208..10264264 | 9..65 | 100 | -> | Plus |
| 2L | 10264549..10264633 | 66..150 | 100 | -> | Plus |
| 2L | 10264764..10264889 | 151..276 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:48 Download gff for
UFO11103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10264208..10264264 | 9..65 | 100 | -> | Plus |
| arm_2L | 10264549..10264633 | 66..150 | 100 | -> | Plus |
| arm_2L | 10264764..10264889 | 151..276 | 100 | == | Plus |
