UFO11106.5prime Sequence
1102 bp (1012 high quality bases) assembled on 2012-03-05
> UFO11106.5prime
CAGTCGACATGGCATGGGTTCCCAATTCGCAGTTCGAGGATGATCTGGTC
GACATGGAGCCGGATTTCAATTTTGTCCATGGTCAACTGGCCTACGACAT
GAAGAAGCAAGGGGAGTTTTGGCCGCGACCGAAATGCACATATGAATATC
TGAAGTCCCGGGAAAAGAGGAATTCCGAGCTCGAAAATATCCATGGAAGC
AGAGGCGGAACTGGTCGTGATATTCGGCAAAGCCTTCAGCTAATGGAGAA
CATACAGAAGATAGCAGGCACAAGGCCGCTGGGCGAGCACGCCACTATGA
AAGATTGGGAGGATGAAAGCACAAATGAGCTAGAGGCGTTAGCCATGATG
CGTCACTTCGGAATGATGTCCATGGCAACAGATTCGCTGCCCGTTCTGCC
CGAAGTAAAACCACCAGAAGGACCCATTAAAATTATAAGAAACGGACGGA
AACAATTTCCCCTCATCACAGACCCCGAATTTTTTAAACCACGCAAGATT
CCCCGAACGAAGAATTCCAGTTCCAGTAGTTCGTATCATACTGCCAATAG
TTCAATCAGTTCCTTCAGCCTTTATGAATCTGCCGCTTCAGATTTGGACA
GCAGCAAGAAGCAGGGCGAGATCAAGGCGTCAAAGTCGGAGAAATACCTC
GAAGTACCTTACAAACAGCTTGCGGAGAGTTACGACCAGGAAGTGGAATC
ACCAGTCCAATTTGGAAACCAATTCAATGAAGCAAGCTTTCTAGACCATT
CGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCAT
AATCATAATCACAACTAGCCTATGAGATCCTGGTCATGACTAGTGCTTGG
ATTCTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGTCATTACTGTATCTATCAACAGAGTCAGCGAGCT
CGATATCAATTACGCCCCGCCTGCACTCATCGCAGTACTGTTGTAATCAT
TAGCATTCTGCGACTGCAGCATCACAACGCATGATGACTGAATCGCAGCG
CATCAGCACTTTTCGCTGCTATATATTGCCCATGGTGAAACCGGGGACAA
GA
UFO11106.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| squ-RC | 1171 | CG4711-RC | 236..959 | 8..731 | 3620 | 100 | Plus |
| squ-RB | 1029 | CG4711-RB | 94..817 | 8..731 | 3620 | 100 | Plus |
| squ-RA | 1372 | CG4711-RA | 437..1160 | 8..731 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16680718..16681441 | 8..731 | 3620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:09:27 has no hits.
UFO11106.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:36 Download gff for
UFO11106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 429..1163 | 1..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:50 Download gff for
UFO11106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 431..1165 | 1..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:30 Download gff for
UFO11106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 431..1165 | 1..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:30 Download gff for
UFO11106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16680712..16681446 | 1..736 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:50 Download gff for
UFO11106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16680712..16681446 | 1..736 | 99 | == | Plus |
