UFO11107.5prime Sequence
1115 bp (1009 high quality bases) assembled on 2012-03-05
> UFO11107.5prime
CAGTCGACATGTCGAACAGATTGTTGGAATCCCTTATCTACTGGCGCGAT
GTGAAGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGGCGGC
CATCTCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTCCTAA
CCCTCTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACAGGCC
GTGCAAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGCTGGA
TCTGACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCTGTGG
CACATATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGTTGAG
GATATCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCACCTA
CGTGGGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTTGTCT
CGCTGTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGATCGAC
ACTCACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACAAGAT
CCGAGTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCCGAGT
CTGAGAAGGACAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGAAATGGAAAGCCATCACAAACGGCATGATGACCTGAATCGGCAG
CGCATCAGCACTTGTCGCTTGCGTATATATTTTGCCATGTTGAAACGGGG
CGAGAGTGTCATATTGTCACGTTATCAACTGTGAACTCACCAGGGATTGC
CTGAACGAAACATATTCTCATAATCTTAAGAATTGGCCAGTTTCACGGTA
ACGGCAACTTGCATA
UFO11107.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-RC | 1267 | CG33113-RC | 92..697 | 9..614 | 3030 | 100 | Plus |
| Rtnl1-RF | 2700 | CG33113-RF | 1535..2130 | 19..614 | 2965 | 99.8 | Plus |
| Rtnl1-RG | 2271 | CG33113-RG | 277..868 | 23..614 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4994508..4994716 | 441..233 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4994786..4994994 | 233..25 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4994338..4994445 | 548..441 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 4994211..4994277 | 614..548 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:09:30 has no hits.
UFO11107.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:37 Download gff for
UFO11107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 139..749 | 9..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:52 Download gff for
UFO11107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 92..702 | 9..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:32 Download gff for
UFO11107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RC | 92..702 | 9..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:32 Download gff for
UFO11107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4994206..4994277 | 548..619 | 97 | <- | Minus |
| 2L | 4994339..4994444 | 442..547 | 100 | <- | Minus |
| 2L | 4994508..4994716 | 233..441 | 100 | <- | Minus |
| 2L | 4994787..4994994 | 25..232 | 100 | <- | Minus |
| 2L | 4995376..4995391 | 9..24 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:52 Download gff for
UFO11107.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4994206..4994277 | 548..619 | 97 | <- | Minus |
| arm_2L | 4994339..4994444 | 442..547 | 100 | <- | Minus |
| arm_2L | 4994508..4994716 | 233..441 | 100 | <- | Minus |
| arm_2L | 4994787..4994994 | 25..232 | 100 | <- | Minus |
| arm_2L | 4995376..4995391 | 9..24 | 100 | | Minus |
