UFO11108.5prime Sequence
861 bp (628 high quality bases) assembled on 2012-03-05
> UFO11108.5prime
CAGTCAACATGGCCCATACGATGGACGACATGGTCTTCCAGTGCAGCAAT
CAAAACTCGATCTATGTGCTGAATGCCAGCTACGGTTCCTATGGGGACTA
TGGCACATATGCGGCAACAAAGCGTGAAATAAATGGCAGCCGGAGCAGAG
CAGCAAATCCAATTGGGTCGACTTGCTCGAGTGGCGTCCTGCAGCATAAA
TTCAAAACTTTCGGCAGTGCCGCAGCAACTGCAGCAGCCGCGGCAGCTGC
AGCGCCACCAGCCATGGATGCAGCAGCGGGAGGCGCAGCAAACTACGTAA
ATCCTGTCGCTACATCAATGTCAACCGCAATGTGTTCACCGGCAACGGCG
GCAACGGCGGCCCTGCAAAAACTGTTCAATTGCAGCGTCGGCGTCGCCTG
CCAAAATGTCACCCACGCCCACAGCAACCACACCAACCAAGGCAGCAGCA
GCATCAGCAGCAGCCACATCCACATCAGTGGCAGCAACAACAATGCCGCC
GCCAGCAACCATAACAATAGCTGCCTGTCGGCGGCAGGCGGAGTGGGCCT
CCAAGGCGCCCGGAATCAGAGCCGGAGTGGCGAATGCCTCGATGGCGCGG
CGGGAGCGGTTACCTCGCCAGCCGGAGGCGGAGGAGCAGGTGGCCTCCCT
CTGCTCCCAAAGAAGAATTGCACCAATGTCAAATCAGCGCTTATTGCCAG
AAGACAAAGTTTTCTCAATATCTCGAAGAAGAAAAATGGCGCAGCAACGC
GGCAGTTCCGGAAGATGCTGGTGCCTTCAGCAATGAGGCGGATCTCTTCC
ACCCCGAGCGGCAACAACACGGCGGCAACTTTGAATATCAAAGCAACAGT
CGGAGGCTGGA
UFO11108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13594-RB | 2855 | CG13594-RB | 636..1490 | 9..861 | 3970 | 98 | Plus |
| CG13594-RA | 2896 | CG13594-RA | 677..1531 | 9..861 | 3970 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24623673..24624359 | 780..95 | 3265 | 98.7 | Minus |
| 2R | 25286936 | 2R | 24624459..24624543 | 96..12 | 410 | 98.8 | Minus |
| 2R | 25286936 | 2R | 24621579..24621654 | 853..778 | 195 | 89.6 | Minus |
Blast to na_te.dros performed 2014-11-27 21:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2427 | 410..521 | 254 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6965 | 310..533 | 248 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2268..2505 | 290..524 | 246 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6921 | 304..516 | 241 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6880 | 382..526 | 241 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2439 | 410..524 | 202 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6711..6836 | 399..524 | 198 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2667 | 223..512 | 192 | 56.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1187 | 419..528 | 188 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1153 | 443..517 | 168 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1598 | 419..521 | 166 | 68 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 668..725 | 280..220 | 163 | 77 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2885 | 410..554 | 149 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1584 | 458..524 | 146 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6818 | 431..524 | 145 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2373 | 451..521 | 132 | 67.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..217 | 444..540 | 118 | 59.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9247 | 444..540 | 118 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6785 | 453..521 | 113 | 69 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 609..674 | 290..222 | 113 | 65.2 | Minus |
UFO11108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:38 Download gff for
UFO11108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 672..1529 | 1..860 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:54 Download gff for
UFO11108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 673..1530 | 1..860 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:34 Download gff for
UFO11108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 673..1530 | 1..860 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:34 Download gff for
UFO11108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24623673..24624358 | 96..780 | 98 | <- | Minus |
| 2R | 24624460..24624545 | 8..95 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:54 Download gff for
UFO11108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20511983..20512068 | 8..95 | 96 | | Minus |
| arm_2R | 20511196..20511881 | 96..780 | 98 | <- | Minus |
