UFO11109.5prime Sequence
1108 bp (989 high quality bases) assembled on 2012-03-05
> UFO11109.5prime
CAGTCGACATGGTGAACGTAACCATCTACGATGAGGCACCGCAGCTGAAG
CCCAACGAAGTACCCCAAAACATGGCCGCAGGAGCTGATACCCAACTGGA
GCACATGTGCCGTCTGCAGTTCGACTCGCCAGTGCCCCATGTGCGTCTGT
CCGGAATCGTGTGCACCATCGGACCTGCCTCCAGCAGCGTGGAGATGCTG
GAGAAGATGATGGCCACCGGCATGAACATCGCGCGCATGAACTTCTCTCA
CGGATCGCACGAGTACCATGCCGCCACCGTGGCCAATGTGCGCCAGGCGG
TGAAGAACTACTCGGCCAAGCTGGGCTACGAACACCCCGTGGCCATTGCC
CTGGACACCAAGGGGCCCGAGATCCGTACCGGTCTGATCGGAGGCAGCGG
CACCGCCGAGATTGAGCTGAAGAAGGGCGAGAAGATCAAGCTGACCACCA
ACAAGGAATTCCTGGAGAAGGGCTCTCTGGAGATTGTGTACGTGGACTAC
GAGAACATTGTCAATGTGGTGAAGCCCGGCAACCGGGTGTTCGTCGATGA
CGGTCTGATCTCACTGATTGTCCGCGAGGTAGGCAAGGATTCCCTCACCT
GCGAGGTGGAGAACGGCGGCTCTCTGGGTTCCCGCAAGGGTGTGAACCTG
CCAGGCGTGCCCGTCGATCTGCCTGCCGTCTCCGAGAAGGATAAGAGCGA
TCTGCTGTTCGGTGTGGAGCAGAAGTGGACATGATCTTTGCTTCGTTCAT
CCGCAACGCCGCTGCTTTGACCGAGATCCGTAAGGTTCTTGGCGAGAAGG
GCAAGAACATCAAGATCATTTCCAGATCGAGAACCAGCAGGGCATGCACA
ACCTGAACGAGATCATCGAGGCCGGTGATGGCTTATGGTGGCCCGTGAGA
TCTGGGTATTGAGATTCCCGCCGAGTAGGTGTTCCTCGCCCAGAAGGCCA
TGATTGCCCGCTGCACCAAGGCTGGCAAGCTTGTGATCTGCGCCACTCAA
ATGTGAGTCCATGGTGAGAAGCACGTCCCACTCCGGCCTGAATCTTCTGA
TGTGCCACGCTGTGCTCGATTGGTGCCTGAATTGCCTCCATGTTGTCTGT
GAACGCCA
UFO11109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PyK-RA | 2109 | CG7070-RA | 243..1338 | 9..1099 | 4960 | 97.6 | Plus |
| PyK-RB | 1958 | CG7070-RB | 132..1187 | 49..1099 | 4760 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22370776..22371735 | 49..1004 | 4525 | 99.1 | Plus |
| 3R | 32079331 | 3R | 22369524..22369565 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:09:39 has no hits.
UFO11109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:38 Download gff for
UFO11109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RA | 310..1416 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:55 Download gff for
UFO11109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RA | 236..1342 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:35 Download gff for
UFO11109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PyK-RA | 236..1342 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:35 Download gff for
UFO11109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22369517..22369565 | 1..50 | 92 | -> | Plus |
| 3R | 22370778..22371835 | 51..1102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:55 Download gff for
UFO11109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18195239..18195287 | 1..50 | 92 | -> | Plus |
| arm_3R | 18196500..18197557 | 51..1102 | 97 | | Plus |
