UFO11110.5prime Sequence
716 bp (713 high quality bases) assembled on 2012-03-05
> UFO11110.5prime
CAGTCGACATGTTTCTCACAAAGAGTTCAAGTGCGCGGCACTCGTTGCTG
CTGCTTCTGTTGGCCTTTTGCTGCCTGAGCAATGCCTTTGCAGCCAAGAT
AACGAAGAAGGTCGAAAAAACGTCGGAAAAGCCAGAGGTGGAGGCTGCTG
CATCGCCAATCGAGGAGGAAAATGACGATGAAGATGCTGGCGAGGATGGT
GATGACGACGACGACGACGAGGAGGAGGAGACGGGGGAACCTGCGGTGGA
TGCGGCTGACAAAGAAGCTGCAGTAGGGGCATCGAGTAACAAGAACCCCA
ATGCAGTGCAGGCAGCCACAGATCCCACAGATCTCAGTGTCTGGGGCATG
GTTCGCACTCTGTGGGGCTGGCTTCGTAGCGATCTGAGTGAAAGCCTATT
CGGCGATGACGACGACGGGAAGCCCGCGTCCGGCAGCTCAGCTGTGGAGG
GTCGTACCTTTGGCAAAATCCGCCGTCTTCAAATGGCTTTGATACCCATT
ATCTTTAAGTTTTGGCGTCCTTTCGGCTATGGTTGCCTTTCTGGTCGCCA
TTGGTATGAAGTCTCTGTTCCTGCTCAAGGTCTTAGTGGTTATGAATGCC
ATTGCCATTCTGGGAAAGTTCATTACCCCTGAAGTCCAGTTCTATTTGGA
CAGTATGAGAACACGGCGCCGTCCTTCAGATTACCCGGGCTGGAATCCTC
ATGCCAAGGAGTCGTG
UFO11110.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14960-RA | 1444 | CG14960-RA | 242..945 | 9..716 | 3425 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3274044..3274480 | 11..447 | 2170 | 99.8 | Plus |
| 3L | 28110227 | 3L | 3275491..3275756 | 447..716 | 1150 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:09:16 has no hits.
UFO11110.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:34 Download gff for
UFO11110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14960-RA | 235..943 | 4..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:44 Download gff for
UFO11110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14960-RA | 237..945 | 4..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:26 Download gff for
UFO11110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14960-RA | 237..945 | 4..716 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:26 Download gff for
UFO11110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3274042..3274480 | 8..447 | 99 | -> | Plus |
| 3L | 3275492..3275756 | 448..716 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:44 Download gff for
UFO11110.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3274042..3274480 | 8..447 | 99 | -> | Plus |
| arm_3L | 3275492..3275756 | 448..716 | 98 | | Plus |
