UFO11113.5prime Sequence
1130 bp (1023 high quality bases) assembled on 2012-03-05
> UFO11113.5prime
CAGTCGACATGCCGCCTGTTAAGAAGCCCAAGGCGCAGAAGATCGAGAAG
CAAAGCACGCCCAAAAAGCCCATCGATGCAGCCAAGAATGTGGTTTCCGG
ACAGCTAAAGAAAAAGGTGACCAAGGCCAGGCCGCAGAAGCCAAAGGGTC
CAGAACGCGGCGTGGTCATTGTGAAGCACCTGCCTCACGGATTCTTCGAG
CAGCAGCTGCGCCAGTACTTCCGACAGTTCGGTCGGGTGCTGCGCGTCCG
TTTGGCACGTTCGCTGCGCACCGGTAACAGCAAGGGCTACGCCTTCGTGG
AGTTCGAGTACCCGGAGGTGGCCAAGGTGGCTGCCGACACCATGGACAAC
TACCTGATGTTCCAGAAGGTGGTGAAGGCCACCTACATTCCACCAGAGAA
GCAGACACTCAACTTCTTCAGGACTTCCTTGAAGAAGGTTGTCAATAAGG
CCGGCAAGGAAATCTATGTCTCGGATTTAACCAAAGCCACACAGCGCAGC
GTGAAAAAGCAGAATAACTGGGATGAGTCCGCCTGCCAGAAGCGCACCGT
GGCCAATCTCAACAAGATCAAGAAGCTGCAGGAGAAGTACAAGGATCTGG
GCATCGACTTCTCCAACTTACTGGTGGAACCAGTAAAGAAAGCAGCAGGC
TCCGCTGAGGCATCTACAAGCCAGGCAGCCGCCAAGAAAGCCGGTAAGAA
ACAAAAAACGGCCGCGAAGAAAGAACCAACGCTGGAGGATTTGCTGGGCA
ACACCATCAACGAGGACTCCGATGATGAGGACTACGTTGATGCATCCGAT
GATGAGTCCGATCTGGAGGCTGAGGAGGAGCAAGCGGACAGTGAGCAGAC
CAGCGATGACAGCGACGAAGAGGAGGATTTATCACCGCCGCCCAAGCAGA
AAAGACTAAGCTGGCTGATAAACTGAAACGCAAGCCCGGCACTGGTGGTG
GTGCAGAAGAAGAAAATAGCTCCGCCGGGCTAGAGCAACAAGATGCCGCC
ACCCAGAAGTGGCAGCTGGCCGCAGCCAGTCGCTGGGCCAAACCCTTGCC
CAAGGAAGGCAGGAGTCAGGCAAGCTTTCTAGACAATTTCGTGGCGCCGG
CCAGGTAGGGGTCATATCTACCTAACTTAT
UFO11113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6937-RA | 1307 | CG6937-RA | 91..1138 | 9..1055 | 5050 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22585432..22586040 | 448..1055 | 2745 | 98.5 | Plus |
| 3R | 32079331 | 3R | 22585024..22585371 | 103..450 | 1725 | 99.7 | Plus |
| 3R | 32079331 | 3R | 22584863..22584958 | 9..104 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 21:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 566..661 | 730..825 | 110 | 59.8 | Plus |
UFO11113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:42 Download gff for
UFO11113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6937-RA | 78..1137 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:04 Download gff for
UFO11113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6937-RA | 91..1150 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:43 Download gff for
UFO11113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6937-RA | 91..1150 | 9..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:43 Download gff for
UFO11113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22584863..22584958 | 9..104 | 100 | -> | Plus |
| 3R | 22585026..22585370 | 105..449 | 99 | -> | Plus |
| 3R | 22585434..22586040 | 450..1055 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:04 Download gff for
UFO11113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18410585..18410680 | 9..104 | 100 | -> | Plus |
| arm_3R | 18410748..18411092 | 105..449 | 99 | -> | Plus |
| arm_3R | 18411156..18411762 | 450..1055 | 98 | == | Plus |
