UFO11114.5prime Sequence
1124 bp (1015 high quality bases) assembled on 2012-03-05
> UFO11114.5prime
CAGTCGACATGGGCAAGTCCTACGTGATAATTGCGAGAATAGCATTGCTG
CTGAATTTAATAATTGCAGCGGTTTCCCACGAAGCCAAAGATTTTGACGA
TTCAATTTTGTATAAAATTGATTTCGAAGTGCCGGATTTAGATGTGCAGC
CAAGCTTGGGCAATCAGCTGCGAACATTCTACACGCCGGATAAGGAGAAG
TACGACTGCCTGATTCCCACTTTGGAACACCAAAAAGAGGAGGAAAAGTC
CGACAAGCCAGAGTTGTCTCCAATTACTCTGCTGCAGCCCATTTTCTCCG
CCCTGACTTGCACGTACCGCATCGAGGCCTACTGGTCGTACGAAATCTGC
CATGGCCACCATGTGCGTCAGTATCACGAGGAGCGCGAAGGAAAGAACGT
CAAGTTCCAGGAGTACTACCTGGGCAAATGGACCGATGAAAAGATGGAAA
TACTGACAAAAGCCTGGCAAGCAGACATCAAGGCGGGCGTTAAGCCGAAA
TACAAAAGCCTGAAGATCGACAACACTCGGTATCCATACTTTGAGATGGA
ATACAGCGATGGCACTATGTGCGACATAATTAACGCTCCTCGCACCACAA
TGGTGCGTTATGTGTGCTATCCCCATGGTAAGAACGATATCTACTCCTTC
AAGGAGACATCCTCGTGCAATTATGAGGCCATTATACTTTCCTCGGCGCT
GTGCCCAATTCGCGCCCTTCATGCCGAAGAGACCAAGGAACTATCCATAC
AATGTTTCAACTCCGAATCGAAACCGCACAGACCGCTGAGCATGCTGCGG
TCGGAGCTAAAGGAATGGGTTGAATCCGAGGCGGATCTGCTGGTTTTCAA
GGAAAAGGCTACGGAAATCTGTGGCCCAAGACGGATGGCGATTTGGTCAC
CCTTAACTATGGCGGTGATATGGAAAAGTCCTGCTCGAGCATTTCAGATG
GTGACCTGAAGTAGACGAGACTTTCAGCAGCTCCTGCTGTCTATAGCAGC
TCTGAAACTGGACCACACCCATCACTGATCTGACGCCCCTTAGGACTTTA
TATCGGGCAGACTGCTACTGGGGGCAATGGCCTGGTGAGTACGAGTTCTG
CTAGCCGAATGTGGCGTCAGTCAA
UFO11114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6766-RA | 1882 | CG6766-RA | 109..1237 | 9..1121 | 5185 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12039402..12040202 | 1059..268 | 3590 | 98.9 | Minus |
| 2L | 23513712 | 2L | 12040438..12040581 | 152..9 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 12040265..12040379 | 267..153 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:09:58 has no hits.
UFO11114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:42 Download gff for
UFO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 95..1230 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:06 Download gff for
UFO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 102..1237 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:44 Download gff for
UFO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 102..1237 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:44 Download gff for
UFO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12039385..12040202 | 268..1072 | 98 | <- | Minus |
| 2L | 12040265..12040379 | 153..267 | 100 | <- | Minus |
| 2L | 12040438..12040588 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:06 Download gff for
UFO11114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12039385..12040202 | 268..1072 | 98 | <- | Minus |
| arm_2L | 12040265..12040379 | 153..267 | 100 | <- | Minus |
| arm_2L | 12040438..12040588 | 1..152 | 97 | | Minus |
