UFO11116.5prime Sequence
1148 bp (1044 high quality bases) assembled on 2012-03-05
> UFO11116.5prime
CAGTCGACATGTCTGCTCTACGAATATTGGCCCGATTTGTCAGCACTAGG
ACTCTGCGAATTCGTCCGATTCTGGAGATTCCCGCACGCTGCAAGTACAC
CCAACATCAAGGAGTTAAGGGCATTCGGAACAGGAAGAGCTTCTTCGAAG
CCCAAATTCAGGCAGGTCAACAAGGTGAGGAGGATGCGGACTTAGAGCGG
ACAGCCAATAGCGATCTGGCGGATATGCGGTTCTTGGATGATCGAGCCTA
CGACGAGGTGGCTGGAGGAGCCATGAGAATCACACGTGACATAGCCAGCT
CTCAGCAGGTGCTCATCCTCCAACCGTATGTAAAATGGGCAGCCAAACGA
CAGAACGCACCCGTCGATGTTCGGCCCGAGGATCAACTCGCGGAGGCCAC
AGCGCTGATCCACTCCCTGCCCAATTGGCAGGTGGCCAGGGCATTAAAGG
TTCCCCTCGAAAGCCTCGAAAAGAAGACGCTTTTCGGCAGCGGCAAGCTG
GTGGAACTCAAGGAACTGGTCGCCGAATTGCGGCAGGAACGGCATCTAAC
TTGCCTGTTTGTCAGCAAGGGGACACTATCATTCGCCCAAAAACGTTTCC
TGGAGGCGGAGTTTCGCCTGCCAGTAATGGATCGCTATTCCGTTGTTATA
CAGATACTAAGACTGCATGCCACCAGCGCCGAAGCAAAACTGCAGGTAGC
CATGGCTGAACTTCCTTACATTTGGGCGCAGGCTAAGGATGCCAGTGTTA
CGCAGACGCGTCGTCAGGGCTACGCCTTGACCGATCTGCAGAAGGAGATT
CTGCGAACCAGGGAGCGAAAGTTGCGAGCGGAATTAGGATCGTGTCCCGG
CGACAGAGGCAGTTGCTTCGCCAGAAAAGAAAACAGCAAAATTATCCCAT
CGTTGCAGGGGGTGGGGTTACACAAATGCTGGCAAGACTTCCTTGATCAA
GGCACTCACAGTCGAGGATGCACTGCAGCCCAGGATCAGTTGTCGCAACG
CTGATGTGACTGCTCATGCTGGTGTTGCATGCAATCTGGAGGTGATTTAT
ATGGGACCCGGTGGCTTTATGTCGATCTGCCACCGGGACTGTTTGATGCT
TGTGGCCACTTGGAGGGAGTGCATGCTGCGGATTATAAGTCCAGGTCC
UFO11116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42488-RB | 2158 | CG42488-RB | 409..1556 | 8..1148 | 5145 | 97.6 | Plus |
| CG5116-RB | 2158 | CG5116-RB | 409..1556 | 8..1148 | 5145 | 97.6 | Plus |
| CG5116-RA | 2380 | CG5116-RA | 257..1404 | 8..1148 | 5145 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25483851..25484304 | 244..697 | 2270 | 100 | Plus |
| 3R | 32079331 | 3R | 25484359..25484764 | 694..1096 | 1410 | 94.1 | Plus |
| 3R | 32079331 | 3R | 25483561..25483797 | 8..244 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:02 has no hits.
UFO11116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:43 Download gff for
UFO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5116-RA | 247..1385 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:07 Download gff for
UFO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5116-RA | 250..1388 | 1..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:45 Download gff for
UFO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5116-RA | 250..1388 | 1..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:45 Download gff for
UFO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25483554..25483797 | 1..244 | 98 | -> | Plus |
| 3R | 25483852..25484302 | 245..695 | 100 | -> | Plus |
| 3R | 25484361..25484802 | 696..1131 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:07 Download gff for
UFO11116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21309276..21309519 | 1..244 | 98 | -> | Plus |
| arm_3R | 21309574..21310024 | 245..695 | 100 | -> | Plus |
| arm_3R | 21310083..21310524 | 696..1131 | 94 | | Plus |
