UFO11117.5prime Sequence
1123 bp (1025 high quality bases) assembled on 2012-03-05
> UFO11117.5prime
CAGTCGACATGGAACGTTGGCATAACTGCGTAGCAGTGGTGACCGGAGCC
AGTTCGGGAATCGGAGCGGCAATCACCCGAAAACTGATCTCCGCTGGCGT
CATGGTGGTTGCCCTGGCCCGTCGAATGGACCGCTTGGAGCAATTGCGTG
AGGAGCTGCCGCAGGATCGGCGATCGCGATTGCGTATAATGCAGTGCGAT
GTTTCGGATGTGTCATCCGTAAACGCGGTCTTTGACGCGGTGCAGGGGGA
TCTGGGCAACGTGGACATTCTTATCAATAACGCCGGAAAGCTGTCCGGTG
GACAGCTGCTGACTATGTCGGTAGACACTGTGCAGCAGATGCTGCAGACG
AATGTAATGGGCGTGGTCTACTGCACCCAGCGCGCCTTTGAATCGATGCG
GCAGCGCCAGTCCAAGGGTCATGTGGTGCTCATTAACAGCATTGTGGGTC
ACTACATCTTTAATCCCCTGCCTGGAAGTCAGCAGGAACTCAACATGTAC
CCGGCCACCAAGCACGCGATCACCGCTCTTACCGAGCTCTTTCGCCAGGA
GATGCGAGATTTCAAGACCAAAGTCAAGGTCACGGTGAGTACGTGTTTAA
TGAATGCACTACAAACTAATCAGGAAATTATTATTCACAATCGAAGCTTT
AAAGCCTCCCAAAATCTTGTTTTACTCAATAGAAACATAAGTACATATAT
GGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCC
TGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCA
ACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGATC
TATCAACAGGAGTCAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACT
CATCGCAGTACTGTGTATCATAGCATTCTGCGACATGCAGCATCACAAAC
GCATGATGACTGATCGCAGCGGCATCAGCACTGTCGCTGCGTATAATATT
TGCCATGTGAACGGGGGCGAGGAGGTGTCATATTGCAGGTATCAACTGGT
GAAACTCCCAGGATGCTGACGAA
UFO11117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40485-RA | 1192 | CG40485-RA | 21..714 | 8..701 | 3470 | 100 | Plus |
| CG40485-RB | 1449 | CG40485-RB | 21..597 | 8..584 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22961647..22962340 | 701..8 | 3470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:10:06 has no hits.
UFO11117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:44 Download gff for
UFO11117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40485-RA | 15..720 | 1..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:09 Download gff for
UFO11117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40485-RA | 15..720 | 1..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:47 Download gff for
UFO11117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40485-RA | 15..720 | 1..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:47 Download gff for
UFO11117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22961641..22962346 | 1..709 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:09 Download gff for
UFO11117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22363477..22364182 | 1..709 | 99 | | Minus |
