UFO11118.5prime Sequence
1168 bp (1050 high quality bases) assembled on 2012-03-05
> UFO11118.5prime
CAGTCGACATGTGTATATCGGAAACTAAGGAACCTCCGCATCTTCCAATT
TCCAATTCTGCAGGACAAATATCCAAAATGCTGAAGCCGGCCCAGAACAA
GTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTGGTCTACGCCACCGGCT
CATCCGCGCGCAACAGCGGAAGTGCTAGCGGCATCGGCAACGTGGGACGC
ATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGCAGTTTATACGACTGCA
GGACAACGGACTGTCCATTCCAAAAACAGAAGCAGGTACCACCTACACCA
CCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAGTGGTCATTACGACTTG
CCCTTGAAGGGAGATCGCTATGTGAAGTTTACACCAAATCCCATAAAAAT
GAAATCAAAACTCCATGCCATTCAGAGCAACTCGTTGCACTCCATGTCGG
CCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCCGGACAAGGCAGGCAAA
GGTTTGCGCCATTTCTCGATGAAGGTATGCGAAAAGGTGGAGGAGAAGGG
CAAGACCACCTACAATGAGGTGGCCGACGACCTGGTCAGCGAGGAGATGA
AGAACAATGCGTACGACAACAACTGTGATCAAAAGAATATCCGACGTCGT
GTCTACGATGCGCTCAACGTACTGATGGCAATCAATGTTATTTCCAAGGA
CAAGAAGGAGATTCGCTGGATAGGACTGCCCGCAAATTCGACAGAGACAT
TTCTGGCCCTGGAAGAGGAAAACTGTCAGCGCCGCGAGCGAATAAAACAG
AAAAACGAAATGTTGCGCGAAATGATCATGCAGCATGTGGCGTTCAAGGG
ATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAAGGCGTGGTGCCTTCCC
CGAATGCCTCGATCCAGCTACCGTTCATCATCGTGAACACGCACAGTCCA
CGAAAATCAACTGCAGTGTGACCAACGACAAGTCGATACTATTCAGTTCG
ACAAACCTTCGAAATGCACGATGACTTGAGGTGCTCAGGCGTATGGGATT
CTTTTGGGACTGGATAGGGCGATGCACGCCGGGAGAACATGAACGAGTCA
GGTCTGGGGCCTCCAACCTGCCAATATACCGTTAAGAAGCTCTTACGGCA
CACCGGCAAGAACTGGGC
UFO11118.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RB | 2448 | CG4654-RB | 91..1249 | 9..1161 | 5215 | 97.7 | Plus |
| Dp-RA | 2526 | CG4654-RA | 680..1784 | 63..1161 | 4945 | 97.6 | Plus |
| Dp-RC | 1913 | CG4654-RC | 69..1171 | 62..1161 | 4895 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226002..13226335 | 413..746 | 1670 | 100 | Plus |
| 2R | 25286936 | 2R | 13226402..13226641 | 745..983 | 1150 | 99.6 | Plus |
| 2R | 25286936 | 2R | 13225412..13225625 | 9..222 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 13225807..13225938 | 281..412 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 13225690..13225751 | 221..282 | 310 | 100 | Plus |
| 2R | 25286936 | 2R | 13226726..13226775 | 1003..1051 | 185 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:09 has no hits.
UFO11118.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:45 Download gff for
UFO11118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 83..1224 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:11 Download gff for
UFO11118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 85..1226 | 1..1132 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:49 Download gff for
UFO11118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 85..1226 | 1..1132 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:49 Download gff for
UFO11118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13226002..13226335 | 413..746 | 100 | -> | Plus |
| 2R | 13226404..13226639 | 747..981 | 99 | -> | Plus |
| 2R | 13225406..13225624 | 1..221 | 98 | -> | Plus |
| 2R | 13225691..13225751 | 222..282 | 100 | -> | Plus |
| 2R | 13225809..13225938 | 283..412 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:11 Download gff for
UFO11118.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9112911..9113129 | 1..221 | 98 | -> | Plus |
| arm_2R | 9113196..9113256 | 222..282 | 100 | -> | Plus |
| arm_2R | 9113314..9113443 | 283..412 | 100 | -> | Plus |
| arm_2R | 9113507..9113840 | 413..746 | 100 | -> | Plus |
| arm_2R | 9113909..9114144 | 747..981 | 99 | -> | Plus |
