UFO11119.5prime Sequence
1158 bp (1042 high quality bases) assembled on 2012-03-05
> UFO11119.5prime
CAGTCGACATGACAACACATTCACTCTCAGCCGGAGAAATGGACATTGTC
ATACGTGAGGAGGACATTTCTTTGGCCCAAATTGGCGTCTATGCCTCTGT
GTCCTTTCTCGTTGTTTCTGCAGTTGGGGCAGCGCTGTATACCACCTGCT
CAAAACGCTATCGCCTGAACTGGTTCGAACAAAATCTCCTGGAGTCCGCC
AACGAAAAGGATGAAGATCAGCAAAGGGAGGCTTTGGTTGCCGGTGCCGT
GGGCTACAATGTGGACAACGTGAACGAGGTACCGCGTGGGAAATACAGCA
GCGGAAATGCCGGTAACCTCAGCCCCACCTCTCTGAAAAGCGAGGACAAT
GACCCGGCCTTTTGGGTGCCGGCTTCAGTCACCTCCACGGCAGCCATCCA
GCAACAAGTGTCCAATACCACCGAGGAGTCCGCACCGCCAACATCACCCA
CCGGGAGCCTGAAGTCAAACACCTTGTCCTACTGTTCCACCACCTCCGTG
CCAATCGCGAGATCTGATAAGCATGTGGTCCTTGCTATGCATCCGAGCCG
TCCCAGAGTTTCCTCTATGAACGCCAAGCTGGATCACACCAAAATCGACA
TGACCTTGTATAGAAGTCATTCTCAGCCGAAGACTATCAATCCAGTTTCA
CTCAACGAAGTTCGGGGTAATTTGCATGTGAGTCTTGGCTACGATCCAGT
TGGAGGATTGCTAAATGTTCGACTCCTGTAGGCCCAGAATCTGCAACCGA
GGCAATTTAGTGGAACTGCCGACCCATATGCCAAAGTCCGCTTGCTGCCG
GATAAAAAGAACTTTTGGCAGACGCGTATACACAAGAGGACCCTGAATCC
AGTTTTCGACGAGCAGTTTGTTTTTGAGGTAACAGCCGGAGTAATTGACA
AGCGTACTGTGAAATTTTACTATACGACTTTGATGCTTATTCCCGGCACG
TTTGCATCGGAGGAGTAGCTACATTTGGCCACTTGGATCTCAGCGAGCAT
TGAAGTTGTGACCTCCTCTAGTCTGCTCGGCCCAAGATATGAGGTGGATT
TGGGCGATATATGGTGTCCTAGCCTATTTGCCATCAACGGAGCGTTTGAT
GGTCGTTCTTATCAGGCAGACTGCGATGGCCAGCAGTTCCGACCTCCTCG
AGACCTTG
UFO11119.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytalpha-RB | 1931 | CG5559-RB | 65..1181 | 9..1114 | 5235 | 98.6 | Plus |
| Sytalpha-RC | 2189 | CG5559-RC | 333..1439 | 19..1114 | 5185 | 98.6 | Plus |
| Sytalpha-RA | 2037 | CG5559-RA | 181..1287 | 19..1114 | 5185 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17601451..17601843 | 225..617 | 1965 | 100 | Plus |
| 2L | 23513712 | 2L | 17601912..17602146 | 618..852 | 1160 | 99.6 | Plus |
| 2L | 23513712 | 2L | 17600941..17601149 | 19..227 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 17602203..17602478 | 850..1114 | 780 | 93.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:13 has no hits.
UFO11119.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:45 Download gff for
UFO11119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1186 | 9..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:13 Download gff for
UFO11119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1186 | 9..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:51 Download gff for
UFO11119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1186 | 9..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:51 Download gff for
UFO11119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17600938..17601148 | 16..226 | 99 | -> | Plus |
| 2L | 17601453..17601843 | 227..617 | 100 | -> | Plus |
| 2L | 17601912..17602146 | 618..852 | 99 | -> | Plus |
| 2L | 17602206..17602483 | 853..1118 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:13 Download gff for
UFO11119.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17600938..17601148 | 16..226 | 99 | -> | Plus |
| arm_2L | 17601453..17601843 | 227..617 | 100 | -> | Plus |
| arm_2L | 17601912..17602146 | 618..852 | 99 | -> | Plus |
| arm_2L | 17602206..17602483 | 853..1118 | 94 | | Plus |
