UFO11120.5prime Sequence
1168 bp (1029 high quality bases) assembled on 2012-03-05
> UFO11120.5prime
CAGTCGACATGGCCAGCCAAAGGATACGGAGCCGGCCAGAAGAAGGACGA
AAAGGACGAAGAATGAGCAGCGCCTGCCGACCGGGAGCCTTGCATACGGC
ATTCAATATGCTGGCGTTGAGCTGGATTATAATCTCAGAGTTATTGCTCA
GTGCTCACTGCCTGAAGGACCTGAAGATATTTGTACCAGAGGCCGTATTA
ATGGGAAATGCAGCGACATTGTCTTGTCAATACGATTTGGAGCAGGCGGC
GCTTTACGCGGTACGCTGGTACTTCGGACAGGAGGAGTTCTACCGCTACG
TTCCACGCGAGGCCAAGCCCACATTTGTCTTCGCCGTTGCCGGCATTAAT
GTTGATCTCGCCAACTCGGATGCCACGTCGGTGACGTTGAAGGGTGTCAC
CCGGGAGCTGAGCGGCAGCTATCAGTGCGAGGTCTCCGAGGACGCACCGC
TCTTCCACACCGAGATTCGATCGGCCCACATGCAGGTGATTGAGCTGCCC
AAAGACGATCCGGTGATGCAGGTGGACAAGAAGGTGATTGGCGTGAACGA
CAACTTCAAGGCTGTGTGCACGGTGGGCCCTTCGTATCCGCCGGCCAACA
TCACCTGGAGCATCAACGGAAACCAGATCCGCAGGACGCCGCTGCAGCGC
ATCTCGCAGGACACCTACGAGGGCTCCACTACGTACTCCTCGCTGGATAT
CTACCCCAACAGCCAGGCGCTGCAGGGCTTCTTCGAGACGAAGTATCAGC
ACAGCGTGAACCTGCAGTGCGTGGTGACCATCCGGCACATGTACCACAAA
GTCGTGGCGCAGCGGATCGGGCTGAATGCTGCGCCGCCGACGACCATATC
GCCGAATCTGCTGGGACTCGAGGGATCCAAGCGGTATGCCAACGGAAATC
CGGACAACTCGGCGCTGACAGGCGCCTCGCAGCGCTGCTGCATTTGCTGT
GGAGCATTTGGCGCTGTTTTCGCTGGCGATTTCACACTGGCCATGGCGCA
TCTGGCAAGCTTTCTAAGACATTCGTTTGGCGCGCGGGCCCAGTAATGGT
CATAATCATAATCATAATCATAATCATAATCACACTAGCTAAGAAAATCT
GGTCATGACTAGTGCCTTGATCTCAACAATAAAAAACGCCGGGCGCCACC
GAGCTCGAACAATCGATT
UFO11120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-VI-RB | 3540 | CG14064-RB | 752..1750 | 6..1004 | 4920 | 99.6 | Plus |
| beat-VI-RA | 1915 | CG14064-RA | 752..1750 | 6..1004 | 4920 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28472644..28473024 | 624..1004 | 1780 | 99 | Plus |
| 3R | 32079331 | 3R | 28472155..28472424 | 357..626 | 1350 | 100 | Plus |
| 3R | 32079331 | 3R | 28462052..28462199 | 6..153 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 28464075..28464189 | 242..356 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 28463714..28463807 | 153..246 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:17 has no hits.
UFO11120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:46 Download gff for
UFO11120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 750..1754 | 1..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:15 Download gff for
UFO11120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 746..1750 | 1..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:53 Download gff for
UFO11120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-VI-RA | 746..1750 | 1..1004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:53 Download gff for
UFO11120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28464079..28464189 | 246..356 | 100 | -> | Plus |
| 3R | 28462046..28462199 | 1..153 | 98 | -> | Plus |
| 3R | 28463715..28463806 | 154..245 | 100 | -> | Plus |
| 3R | 28472155..28472424 | 357..626 | 100 | -> | Plus |
| 3R | 28472647..28473024 | 627..1004 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:15 Download gff for
UFO11120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24287768..24287921 | 1..153 | 98 | -> | Plus |
| arm_3R | 24289437..24289528 | 154..245 | 100 | -> | Plus |
| arm_3R | 24289801..24289911 | 246..356 | 100 | -> | Plus |
| arm_3R | 24297877..24298146 | 357..626 | 100 | -> | Plus |
| arm_3R | 24298369..24298746 | 627..1004 | 98 | == | Plus |
