UFO11122.5prime Sequence
1156 bp (1025 high quality bases) assembled on 2012-03-05
> UFO11122.5prime
CAGTCGACATGCCCCACTGCCACACAATGGTCTATATGCGAATTGTGCTA
ACAACCTTGGTGACCATTACGTGTCTGCTGGGGGACAACTTTGTGGAGCT
GACCCAGCATCCATTGCTGAAGGCCCTGGCCGACAATGCCACCCATGCGG
CCATTGGAGCACTCACGGGAATCACGTTCGCCACACAATTCTACGAGCGC
ACCTCGCAGTTGTTCGGCTGGATATTGATTTTCACCTGCTTCGTTGTGTC
ATCGTTCATTGACTTGGACCACTTTGTGGAGGCTCGTTCCCTTTATTTGG
AGGATGCCACCAATCTGTCGAAGAGGCCCTTCCTCCACTGCTCCAGCATT
ATAGTGGTTATGCTGCTGTTCTACATGTGCACCGCCTGTTTGAACTATTT
CCGGACCAGCCTAATGCTGGGATCCCTACTCTGTGCCTTCATCACACACC
ACACCAGGGACGCCGTGCGGCGGGGCTACTGGCTGTGCCCGCTAGGTCAC
ACGGACAGGATGCCCCAGCTAGCCTACATATTGACCACCATCCTGACGCC
CCATCTGCTGGGCTGCCTGCACAACGTGTGCCGCAGCGCAACCGTGCTTA
ACTTCCTGGGGCAGTACGTCAAGCTAAGCGAGGGCCAATACCGCAGCGGC
TCCACTGCCAACTATCGCTACATGCAGGTCGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAGCATTCTGCCGACATGCAGCCATCACAAACGCATGATGATC
TGATCGCAGCGCATCAGCACCTTGTCGCTGCGTATATATTTGCCCATGGT
GAAACGGGGCGAAGAGTTGTCATATTGGCCACGTTTAAATCAACCTGATG
AACTCACCCAAGGATTGACTGAACGAAACTATTCCAATAACCTTTAGGAA
ATAGGC
UFO11122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10866-RB | 1874 | CG10866-RB | 247..918 | 9..680 | 3360 | 100 | Plus |
| CG10866-RA | 1337 | CG10866-RA | 247..918 | 9..680 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3937016..3937395 | 680..301 | 1900 | 100 | Minus |
| 3L | 28110227 | 3L | 3937452..3937746 | 303..9 | 1475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:09:43 has no hits.
UFO11122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:39 Download gff for
UFO11122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10866-RA | 190..873 | 1..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:56 Download gff for
UFO11122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10866-RA | 190..873 | 1..687 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:37 Download gff for
UFO11122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10866-RA | 241..924 | 1..687 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:37 Download gff for
UFO11122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3937453..3937750 | 1..302 | 98 | | Minus |
| 3L | 3937010..3937393 | 303..687 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:56 Download gff for
UFO11122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3937010..3937393 | 303..687 | 99 | <- | Minus |
| arm_3L | 3937453..3937750 | 1..302 | 98 | | Minus |
