UFO11123.5prime Sequence
1139 bp (1030 high quality bases) assembled on 2012-03-05
> UFO11123.5prime
CAGTCGACATGTTCAAATTCGTCGCCTTCTTCGCTTGCCTGGCTGTGGCC
GCCGCTGCCCCCGGTCTGATTGCCGAGACCCACTCGATTGTCCAGCCGGC
GATTCTTGCCAAGACTGCCTACGTGGACACCAGCGCCTCCTCGGCCATCA
CCCACCAGAGCAACGTGAACCTGGTGCGCAAGGTGCCAGTGGTCTACTCC
GCCCCGGTTGTTCATGCTGCCCCAGTGGTACATGCCGCTCCTCTGGTCAA
GACTGTGATCCCTGCCGCTCCCCTGGTCAAGACTGTGATCCCTGCCGCTC
CCGTCCTTAAGACTGTGGTCTCCTCTGCTCCTCTGGTCCACACTGTCGTC
CCAGCCGCTCCACTGGTCAAGACCGTCATCCCAGCTGCTCCGGTTATCAA
GACCGTGATCCCAGCTGCCCCTCTGGTTCACACCGTCCACAGCGCCCCAG
TTGTCTACTCCGCCTACCACAAGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAACTCACCCAGGGATTGGCTGAGACGAAAACATATTCTCAT
AAACCCTTTAGGGAATAGGCCAGGTTTTCACGTACACGCCACATCTTGCG
ATTATTTGTGTAGAACTGCGAAATCGTCGTTGTATTCACTCCAGAGGCGA
TGAACGGTTTCAGTTTGCTCATGAAACGGTGTAACATGTGACACTATTCC
CATATCACAGCTCACGTCTTTTCATTGGCCAATACGAAA
UFO11123.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13059-RA | 572 | CG13059-RA | 60..524 | 9..473 | 2325 | 100 | Plus |
CG13059-RA | 572 | CG13059-RA | 288..398 | 327..437 | 225 | 80.2 | Plus |
CG13059-RA | 572 | CG13059-RA | 378..488 | 237..347 | 225 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16323808..16324260 | 21..473 | 2265 | 100 | Plus |
3L | 28110227 | 3L | 16324020..16324175 | 263..418 | 285 | 78.8 | Plus |
3L | 28110227 | 3L | 16324050..16324205 | 233..388 | 285 | 78.8 | Plus |
3L | 28110227 | 3L | 16324024..16324134 | 327..437 | 225 | 80.2 | Plus |
3L | 28110227 | 3L | 16324114..16324224 | 237..347 | 225 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:09:46 has no hits.
UFO11123.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:40 Download gff for
UFO11123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13059-RA | 60..528 | 9..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:59 Download gff for
UFO11123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13059-RA | 60..528 | 9..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:39 Download gff for
UFO11123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13059-RA | 60..528 | 9..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:39 Download gff for
UFO11123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16323808..16324260 | 21..473 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:59 Download gff for
UFO11123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16316908..16317360 | 21..473 | 100 | == | Plus |