UFO11125.5prime Sequence
1128 bp (1025 high quality bases) assembled on 2012-03-05
> UFO11125.5prime
CAGTCGACATGACGACTGCCTTTGATGCCGCACACACTGAGGGGCCGGGA
TTCGTGGGCATTCGGTTCTGCCAGGAGTGCAACAACATGCTGTACCCCAA
GGAGGACAAGGAGAACAAGATCCTGCTGTACGCCTGCCGGAATTGCGATT
ACAAACAGGAGGCGGACTCCAACTGCATCTACGTGAACAAGATTATGCAC
GAGATCGACGAGCTGACCCACATTGTGCCCGACGTGATTTCCGATCCCAC
GCTGCCGCGCACCGAAGACCACGCTTGTCCCAAGTGCTCCCATCGGGAGG
CGGTCTTCTTCCAGGCGCAAACTCGTCGCGCCGAAGAGGAGATGCGACTG
TACTACGTGTGCACCAACCAGAACTGCACCCACCGTTGGACGGAGGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAACATATTCTCATAACCCTTTAGGGAAATAGGCCAGGTTT
TCACCGTACACGCCACATCTTGCGATATATGTGTAGAAACTGCCGGAAAT
CGTCGTTGTATTCACTCCAGAGCGATGAAACGTTTCAGTTTGCTCATGAA
ACGGTGTAACAGGTGACACTATCCCATATCACAGCTCACGTCTTTCATGC
CATACGAAGTCGATGACCATTCATCAGGCGGCAGAATGTATAGCCGGATA
GCCTGGCTATTTTCTTTACGCTCTTTAA
UFO11125.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpII15-RC | 1035 | CG3284-RC | 43..430 | 8..395 | 1940 | 100 | Plus |
| RpII15-RB | 694 | CG3284-RB | 36..423 | 8..395 | 1940 | 100 | Plus |
| RpII15-RA | 701 | CG3284-RA | 43..430 | 8..395 | 1940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14309186..14309573 | 8..395 | 1940 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:29 has no hits.
UFO11125.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:49 Download gff for
UFO11125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII15-RA | 31..425 | 1..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:21 Download gff for
UFO11125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII15-RA | 50..444 | 1..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:40:58 Download gff for
UFO11125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpII15-RA | 36..430 | 1..395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:40:58 Download gff for
UFO11125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14309179..14309573 | 1..395 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:21 Download gff for
UFO11125.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10134901..10135295 | 1..395 | 99 | == | Plus |
