UFO11127.5prime Sequence
1160 bp (1022 high quality bases) assembled on 2012-03-05
> UFO11127.5prime
CAGTCGACATGATGGGAAGCAATTATCCCGAGCACGGGACCAAGCCGAGA
TCCGCCAAATACCACAAACAACAGAACCACCGAGTGGTGCGCAAGCAGCC
GCCGCGTCCCGCTGTTAGCGACCGCCACAACATCTACATCACCAGCAAGA
CAGACTTTAAGGCCCAGCAGCGCCGCTGCGAGGAGCTGATTAACTCCGGC
GCCCACGAGATCTTTCTGCATTGCATGGGCTTCTCCGTAACCCGCGGCCT
CAATATCGCCCTACGCCTCGTCCAGAATTCTGACGGCGCCCTTAGCTACG
CCATCAACACCTCCACCGTTCAGCTGGTGGACGAACTGCACCCGCTGTGC
GATGCCGAGGACATAACCTTCCGCCAGCGCAACAACTCGGCCCTGCACAT
CAAGATCCTCAATAACAGTCTCTTCGACATCGCCGTGCCGCAACCGTCGC
AGTCCCAGACGCAAGCCCAGTCCCTGGGCCAGTTCCGAGGCAAGGCGAAG
GCCAGGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGT
AAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTA
GGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCC
CGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCAT
TACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCC
CCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCC
GACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAATCAAACTGGTGAAACTCAC
CCAGGGATGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAATA
GCCAGGTTTTCACCGTACACGCCACATCTGCGATATATGTGTAGAACTGC
GAAATCGTCCTGTATCACTCCGAGCGATGAAACGTTTCAGTTGGCTCATG
AACCGTGTAACAGGGAACCTTCATACCAGCTACGTCTTCATGCCATACGA
ATTCGGAGTT
UFO11127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpp20-RB | 1395 | CG33931-RB | 99..599 | 9..509 | 2505 | 100 | Plus |
| Rpp20-RA | 1244 | CG33931-RA | 99..599 | 9..509 | 2505 | 100 | Plus |
| CG33932-RB | 1395 | CG33932-RB | 99..599 | 9..509 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19744753..19745102 | 160..509 | 1750 | 100 | Plus |
| X | 23542271 | X | 19744529..19744683 | 9..163 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:32 has no hits.
UFO11127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:50 Download gff for
UFO11127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33932-RA | 97..601 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:23 Download gff for
UFO11127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp20-RA | 99..603 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:00 Download gff for
UFO11127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33932-RB | 99..603 | 9..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:00 Download gff for
UFO11127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19744529..19744685 | 9..167 | 98 | -> | Plus |
| X | 19744761..19745102 | 168..509 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:23 Download gff for
UFO11127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19638562..19638718 | 9..167 | 98 | -> | Plus |
| arm_X | 19638794..19639135 | 168..509 | 100 | == | Plus |
