UFO11128.5prime Sequence
1148 bp (1050 high quality bases) assembled on 2012-03-05
> UFO11128.5prime
CAGTCGACATGAAGCCCCAGACAAGCGAGCAAAATGGCAGTGGCCAAAAT
GGCGAGGGTGCCGCAGATGCCGTGGCCGTTGCCACGATCCCCACGGGCGA
AGCCTCCGCCGCCTCCGCCACGTCCGGCACCGATCTAACGGTCTCCAAAA
ACAGCCAGCAGCTGAAACTGGAAATGCTCAACTTGGAGCTGGCCAGCAAT
GGAAGCGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAGCTGGACCA
CAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACGCTCGTATC
GTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCCAGGGACTGATC
AAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACCAAGGGCTA
CGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGACGAGGATC
ATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCATGTGCGAG
CATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTATTTGCCGTG
CAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGAAATATTTT
CGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGATCGCAGTGGCC
GTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTCGTAGAGGGAGT
CCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAACAGCAAAACTG
TTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCAAGACCCGTGAG
GAATTCCTGAACTTAGTCAATAGCAAAGCAAGCTTTCTAGACCATTCGTT
TGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATC
ATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCATAAAAAACGCCCGGCGGCAACCGAGCGTCTGACAATCCAGATGGA
GTCTGAGTCATACTGGATCTATCACAGAGTCCAGCGGAGCTCGAATATCA
AATACCGCCCGCCTGCCACTCATCGGCAGTACTGTTGTATCATAGCAATT
CTGCGACATGGAAAGCCATCCAACGGCATGATGACTGATTCGCAGCGG
UFO11128.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-RB | 1625 | CG9441-RB | 159..979 | 7..827 | 4105 | 100 | Plus |
| Pu-RA | 1793 | CG9441-RA | 527..1147 | 207..827 | 3105 | 100 | Plus |
| Pu-RC | 1744 | CG9441-RC | 478..1098 | 207..827 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21179937..21180147 | 207..417 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 21175473..21175674 | 7..208 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 21181419..21181585 | 417..583 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 21181836..21181962 | 701..827 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 21181644..21181761 | 583..700 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:36 has no hits.
UFO11128.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:51 Download gff for
UFO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 150..977 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:24 Download gff for
UFO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 152..979 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:02 Download gff for
UFO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 152..979 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:02 Download gff for
UFO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21179938..21180147 | 208..417 | 100 | -> | Plus |
| 2R | 21181420..21181585 | 418..583 | 100 | -> | Plus |
| 2R | 21181645..21181761 | 584..700 | 100 | -> | Plus |
| 2R | 21181836..21181962 | 701..827 | 100 | == | Plus |
| 2R | 21175466..21175673 | 1..207 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:24 Download gff for
UFO11128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17062971..17063178 | 1..207 | 99 | -> | Plus |
| arm_2R | 17067443..17067652 | 208..417 | 100 | -> | Plus |
| arm_2R | 17068925..17069090 | 418..583 | 100 | -> | Plus |
| arm_2R | 17069150..17069266 | 584..700 | 100 | -> | Plus |
| arm_2R | 17069341..17069467 | 701..827 | 100 | == | Plus |
