UFO11129.5prime Sequence
1148 bp (1040 high quality bases) assembled on 2012-03-05
> UFO11129.5prime
CAGTCGACATGCGCGAAATTCAGGCCTCCCAATTTATGACGAAAACAAAT
CGCTTGGTGATTTTGAGGCATGGCGAAAGTGATTTCAACATTGAGAACAA
ATTCTGCGGTTGGCATGATGCGCCATTGAGTGAATTCGGCGTCCAGGAGG
CCCTGACTGTGGCGATTCCCGCGCTCGTCCAATCCGAGTTGGAATTCGAC
GTGGTCTATTCATCCGTATTGAGCAGATCTCGTCAAACGGCCGAATTGAT
ACTCTCCAAGTTGAACTGCGCCTATGTGCCCATTAAGGAGGATTGGCGGC
TGTGCGAAAGGCACTACGGAAATCTGACTGGTTGCCGGAAACGAGTGGTA
GCCGATCGCTATGGGGAGGAGCAGGTTCAGGCCTGGCGACGTGGATACGA
CTGCGTACCGCCGCCCATCGATGAGAAGAACCGCTACTTCTACACCATTT
GCAGCAATCCCATATTCGATGATGTTCCTCGCGGTGAGTTCCCCCTCGCG
GAATCCCTTCACATGTGCGTCGATCGAGTGAAACCCGTGTGGAAGGAGGT
CAGGCGGGAAGTGTTCCAAGGCACCCGGGTACTAATGTGCGTCCACGGAA
CTGTGGCCCGTGCTCTCGTCCAGCACATTGAGGGAATCTCCAACGAGGCC
ATCGAAAAGGTTAACATTCCAAATTGCGTGCCACGCGTCTATGAGTTCGA
TTTGAAAACGGGAGGCTTGGTTGGAGCTGCCATCAATCTGGGGGATCAGG
AGTATATTAGGCGGAAGACAGCCCAGGTGGCAGCCATTTGGTGACGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
CAGGAGTCAGCGGAGCTCGATTATCAAATTACGGCCCCGCCTGCCACTCA
TCGCAGTTACTTTGTTTTTAATTCATTAGGCATTCTGGCGGACATGGGAA
GGCCATACCAAACGGCATTTATTGACCCTGGATCCGCCAGCGGATCAG
UFO11129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7059-RD | 1261 | CG7059-RD | 207..992 | 9..795 | 3910 | 99.9 | Plus |
| CG7059-RC | 1238 | CG7059-RC | 201..969 | 26..795 | 3825 | 99.9 | Plus |
| CG7059-RA | 1332 | CG7059-RA | 295..1063 | 26..795 | 3825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22391368..22391864 | 138..634 | 2485 | 100 | Plus |
| 3R | 32079331 | 3R | 22391919..22392074 | 633..788 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 22391194..22391307 | 26..139 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 21:10:39 has no hits.
UFO11129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:51 Download gff for
UFO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RD | 207..992 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:26 Download gff for
UFO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RD | 207..992 | 9..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:03 Download gff for
UFO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RD | 207..992 | 9..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:03 Download gff for
UFO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22390186..22390202 | 9..25 | 100 | -> | Plus |
| 3R | 22391194..22391306 | 26..138 | 100 | -> | Plus |
| 3R | 22391369..22391863 | 139..633 | 100 | -> | Plus |
| 3R | 22391920..22392080 | 634..795 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:26 Download gff for
UFO11129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18217642..18217802 | 634..795 | 99 | == | Plus |
| arm_3R | 18215908..18215924 | 9..25 | 100 | -> | Plus |
| arm_3R | 18216916..18217028 | 26..138 | 100 | -> | Plus |
| arm_3R | 18217091..18217585 | 139..633 | 100 | -> | Plus |
