UFO11131.5prime Sequence
1131 bp (1037 high quality bases) assembled on 2012-03-05
> UFO11131.5prime
CAGTCGACATGTCGGCGTTTGTGAAAACCGTGTGCTTGGCCCAAAAGCTG
TGCGCCGCCAATCCCGTCGTGGCTCGCCAGGCGATCCGCAGCATGGCTGG
CTGGAATAAGGACTACAAGCCGGGTCCGTATCCACAGACGGAGAAGGAGC
GCCTGGCGGCGGCCAAGAAGTACTATCTGTTGCCGGAGGAGTACAAACCG
TATGCGGACGATGGTCTGGGCTACGGAGATTATCCCAAATTGGGCTACGG
TCTGGGTGTGGAGGCCAAGGACTCGTACTATCCCTGGGACTATCCGGAGC
ACAAGCGCAACCAACACGAGCCCATCTCGGCGGATCATGATCTGTACAGC
GAGGATCGCTGGTCGCAGGCCGAACCGCCACGCTACAGCAATGCGTACTA
CTTTGCCTGCTTCCTGGGCGTGATGTCCGGCTGCCTGGCACTCTACTACT
GGCTGGATGACAAGAAGATGTACCGCCCCGTGGCCGCCAAGCAATATCCC
AGCCCTGGCGTCAAGCACTACACCTTCGAGAAGGCAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAT
ATTTGCCCATGTGAAACGGGGGCGAGAGTTGTCATATTGGCCACGTTTAA
TCAAACTGTGAACTCACCCAGGATTGCTGAGACGAAAACATATTTCTCAT
AAACCCTTTAGGGAAATAGCCAGTTTCACCGTACACGCCAATCTTGCGAA
TATATTGTGTAGACTGCCGAATCGTCTTGTATTTCACTCGAGCGATGAAC
GTTCAGTTTGTCATGGACGGTTACAGGGTGT
UFO11131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3192-RC | 706 | CG3192-RC | 78..602 | 9..533 | 2625 | 100 | Plus |
| CG3192-RB | 805 | CG3192-RB | 177..701 | 9..533 | 2625 | 100 | Plus |
| CG3192-RA | 1321 | CG3192-RA | 693..1217 | 9..533 | 2625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6677652..6677881 | 323..94 | 1150 | 100 | Minus |
| X | 23542271 | X | 6677366..6677575 | 533..324 | 1050 | 100 | Minus |
| X | 23542271 | X | 6678000..6678084 | 93..9 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:10:42 has no hits.
UFO11131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-03-05 10:38:52 Download gff for
UFO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3192-RA | 688..1224 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:14:28 Download gff for
UFO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3192-RA | 688..1224 | 1..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:41:04 Download gff for
UFO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3192-RA | 688..1224 | 1..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:41:04 Download gff for
UFO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6677366..6677575 | 324..533 | 100 | <- | Minus |
| X | 6677652..6677881 | 94..323 | 100 | <- | Minus |
| X | 6678000..6678089 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:14:28 Download gff for
UFO11131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6571399..6571608 | 324..533 | 100 | <- | Minus |
| arm_X | 6571685..6571914 | 94..323 | 100 | <- | Minus |
| arm_X | 6572033..6572122 | 1..93 | 95 | | Minus |
